Os03g0852700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os03g0852700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.95 | 0.399 | 9.04 | 1.66 | 0.559 | -0.591 | 0.331 | 3.46 | -0.0118 | 15.4 | 15.19 | 3579 | -- | -- |
| 80.02 | 0.417 | 9.13 | 1.04 | 0.538 | -0.784 | 0.28 | -- | -0.104 | 15.5 | 10.51 | 9522 | -- | -- |
| 72.2 | 0.396 | 9.04 | 1.66 | 0.562 | -0.595 | -- | 3.45 | -0.00977 | 15.3 | 14.8 | 3361 | -- | -- |
| 80.06 | 0.417 | 9.13 | 1.03 | 0.563 | -0.795 | -- | -- | -0.111 | 15.3 | 10.45 | 9301 | -- | -- |
| 87.4 | 0.435 | 9.04 | 1.68 | -- | -0.766 | -- | 3.2 | 0.00687 | -- | 15.1 | 2598 | -- | -- |
| 89.96 | 0.445 | 9.19 | 0.591 | 0.582 | -- | 0.193 | -- | -0.355 | 15.2 | -- | -- | -- | -- |
| 90.08 | 0.444 | 9.19 | 0.594 | 0.582 | -- | -- | -- | -0.354 | 15.2 | -- | -- | -- | -- |
| 96.88 | 0.458 | 9.13 | 1.07 | -- | -0.867 | -- | -- | -0.0939 | -- | 10 | 9754 | -- | -- |
| 97.6 | 0.46 | 9.19 | -- | 0.543 | -0.273 | -- | -- | -0.376 | 15.2 | 13.88 | 2672 | -- | -- |
| 109.39 | 0.489 | 9.19 | 0.57 | -- | -- | -- | -- | -0.369 | -- | -- | -- | -- | -- |
| 99.39 | 0.466 | 9.2 | -- | 0.571 | -- | -- | -- | -0.42 | 15.2 | -- | -- | -- | -- |
| 113.85 | 0.497 | 9.19 | -- | -- | -0.406 | -- | -- | -0.366 | -- | 14.2 | 2598 | -- | -- |
| 117.95 | 0.507 | 9.2 | -- | -- | -- | -- | -- | -0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.48 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 5 | 66.79 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 10 | 66.89 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 11 | 66.90 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 15 | 66.94 | radiation | 10 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 19 | 67.03 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 22 | 67.09 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 23 | 67.13 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 24 | 67.18 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 25 | 67.18 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 28 | 67.28 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 32 | 67.36 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 50 | 67.47 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 64 | 67.59 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 66 | 67.63 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 75 | 67.72 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 90 | 67.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 94 | 67.77 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 116 | 67.91 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 135 | 68.01 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 153 | 68.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 165 | 68.15 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 167 | 68.16 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 177 | 68.20 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 185 | 68.23 | wind | 7 | 43200 | < th | dose dependent | sin | 23 | NA |
| 192 | 68.24 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 239 | 68.37 | wind | 1 | 43200 | > th | dose dependent | sin | 23 | NA |
| 253 | 68.40 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 258 | 68.41 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 282 | 68.48 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 325 | 68.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 326 | 68.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 331 | 68.59 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 338 | 68.60 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 354 | 68.64 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 368 | 68.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 403 | 68.72 | wind | 3 | 43200 | > th | dose independent | sin | 0 | NA |
| 404 | 68.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 413 | 68.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 422 | 68.74 | wind | 7 | 43200 | < th | dose dependent | rect. | 9 | 16 |
| 479 | 68.85 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 13 |
| 505 | 68.88 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 512 | 68.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 513 | 68.89 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 530 | 68.92 | radiation | 10 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 540 | 68.93 | wind | 3 | 43200 | < th | dose independent | sin | 0 | NA |
| 554 | 68.94 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 555 | 68.94 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 580 | 68.98 | radiation | 10 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 582 | 68.98 | radiation | 30 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 583 | 68.98 | radiation | 30 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 585 | 68.98 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 606 | 69.00 | radiation | 30 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 608 | 69.00 | radiation | 30 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 619 | 69.01 | radiation | 10 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 652 | 69.04 | radiation | 30 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 665 | 69.05 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 691 | 69.06 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 18 |
| 695 | 69.07 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 728 | 69.09 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 744 | 69.10 | wind | 9 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 756 | 69.11 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 790 | 69.13 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 814 | 69.16 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 831 | 69.16 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 19 |
| 832 | 69.17 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 833 | 69.17 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 872 | 69.20 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 17 |
| 887 | 69.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 951 | 69.25 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 2 |