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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0852400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.41 (0.0712) R2 : 0.42
β1 : -3.97 (0.264) R2dD : 0.307 R2D : 0.147
β2 : 2.81 (0.462) R2dC : 0.333 R2C : -0.531
β3 : -3.42 (0.413) R2dE : 0.613 R2E : -0.305
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.05 (0.627) R2dD*E : 0.0689 R2D*E : 0.00924
γ1 : -1.23 (0.154) R2dN8 : 0.117 R2N8 : -0.0056
σ : 1.32
deviance : 808.94
__
_____
C
peak time of C : 2.75
E
wheather : radiation
threshold : 0.4577
memory length : 339
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.93
open length of G : 22.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
807 1.33 4.42 -4.06 2.89 -3.47 -1.85 6.07 -1.28 2.65 0.4011 331 4.94 22.5
833.66 1.34 4.38 -3.86 2.89 -3.75 3.95 -- -1.27 2.4 0.5594 342 4.93 22
808.94 1.32 4.41 -3.97 2.81 -3.42 -- 5.05 -1.23 2.75 0.4577 339 4.93 22.4
902.97 1.4 4.4 -3.81 2.85 -3.43 -- -- -1.21 2.72 0.4784 330 4.85 22.4
855.5 1.36 4.35 -3.77 -- -1.12 -- 4.86 -1.08 -- 0.07998 222 5.25 22.1
924.21 1.43 4.29 -3.25 1.1 -- -3.6 -- -0.932 11.6 -- -- -- --
976.62 1.46 4.3 -3.41 1.15 -- -- -- -0.953 10.7 -- -- -- --
925.08 1.42 4.37 -3.67 -- -1.1 -- -- -1.02 -- 0.4206 89 5.43 22.2
1271.79 1.66 4.31 -- 2.58 -3.08 -- -- -0.857 2.5 2.675 299 5.05 22.6
1058.16 1.52 4.33 -3.43 -- -- -- -- -0.959 -- -- -- -- --
1282.86 1.68 4.21 -- 1.18 -- -- -- -0.573 10.9 -- -- -- --
1246.44 1.64 4.3 -- -- -1.14 -- -- -0.678 -- 3.014 86 5.17 22.3
1368.67 1.73 4.24 -- -- -- -- -- -0.578 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 818.77 radiation 1 270 < th dose dependent rect. 5 23
3 821.52 wind 1 720 < th dose dependent rect. 4 1
4 822.85 humidity 50 1440 < th dose independent rect. 16 1
5 822.95 humidity 50 1440 < th dose dependent rect. 16 1
6 824.79 humidity 50 1440 > th dose independent rect. 16 1
7 829.48 wind 1 90 < th dose dependent rect. 4 1
10 830.25 radiation 1 270 < th dose independent rect. 5 22
12 830.36 radiation 30 14400 < th dose independent rect. 16 9
15 830.93 temperature 30 720 > th dose dependent rect. 18 1
29 830.98 wind 1 90 < th dose independent rect. 4 1
30 831.01 radiation 30 14400 < th dose independent rect. 16 12
33 831.26 atmosphere 1005 30 > th dose independent rect. 4 6
50 831.83 radiation 30 14400 < th dose independent rect. 16 2
51 831.90 radiation 30 14400 < th dose independent rect. 16 4
55 832.78 wind 1 720 < th dose independent rect. 4 1
59 833.23 wind 1 14400 < th dose independent rect. 1 2
64 834.90 temperature 20 30 > th dose independent rect. 4 15
83 837.04 radiation 1 1440 > th dose independent rect. 18 1
84 837.04 wind 1 14400 > th dose independent rect. 1 2
94 837.36 radiation 1 1440 < th dose independent rect. 18 7
95 837.44 radiation 1 1440 < th dose independent rect. 18 10
98 837.92 humidity 70 1440 < th dose dependent rect. 17 2
104 838.37 radiation 1 1440 < th dose independent rect. 18 2
107 838.64 humidity 70 1440 < th dose dependent rect. 17 14
129 840.01 radiation 20 14400 < th dose independent rect. 5 1
131 840.18 humidity 70 1440 < th dose independent rect. 18 14
132 840.20 wind 1 43200 < th dose dependent rect. 2 1
136 840.86 humidity 60 1440 > th dose independent rect. 17 8
137 840.88 humidity 60 1440 > th dose independent rect. 17 12
141 841.00 humidity 60 1440 > th dose independent rect. 17 3
142 841.00 humidity 60 1440 > th dose independent rect. 17 6
147 841.13 humidity 60 1440 < th dose independent rect. 17 3
162 841.26 humidity 60 1440 > th dose independent rect. 17 14
211 841.85 temperature 25 720 > th dose dependent rect. 21 1
227 842.59 radiation 1 270 < th dose dependent rect. 18 23
244 842.85 humidity 60 10 > th dose dependent rect. 10 18
320 843.91 radiation 1 1440 > th dose dependent rect. 18 1
348 844.70 wind 5 43200 > th dose dependent rect. 14 15
351 844.72 humidity 50 1440 < th dose independent rect. 16 18
397 845.11 wind 5 43200 > th dose dependent rect. 13 18
430 845.38 wind 7 43200 < th dose independent rect. 14 18
435 845.46 humidity 50 1440 < th dose dependent rect. 16 18
474 845.65 wind 5 43200 > th dose independent rect. 13 16
478 845.72 humidity 90 4320 > th dose dependent rect. 3 1
552 846.15 wind 7 43200 < th dose independent rect. 14 15
659 847.19 temperature 30 720 > th dose independent rect. 18 1
702 847.44 humidity 70 1440 < th dose dependent sin 12 NA
706 847.53 atmosphere 995 4320 > th dose independent rect. 5 1
721 847.83 humidity 60 1440 < th dose independent sin 12 NA
743 847.95 atmosphere 1005 270 > th dose independent rect. 1 7
745 847.96 radiation 1 270 > th dose independent rect. 11 22
755 848.11 humidity 60 1440 > th dose independent sin 12 NA
761 848.17 radiation 30 4320 < th dose independent rect. 19 13
790 848.47 wind 5 43200 > th dose dependent sin 15 NA
854 848.93 radiation 30 4320 < th dose independent rect. 21 11
863 849.02 atmosphere 1000 30 > th dose independent rect. 4 15
868 849.07 atmosphere 995 43200 < th dose dependent rect. 17 6
879 849.18 wind 1 90 < th dose dependent rect. 4 3
916 849.38 atmosphere 995 43200 < th dose dependent rect. 16 8
920 849.41 wind 5 43200 > th dose dependent rect. 15 1
927 849.46 radiation 30 14400 > th dose dependent rect. 16 1
976 849.64 radiation 30 4320 < th dose independent rect. 3 5
997 849.68 wind 7 43200 < th dose independent sin 15 NA