Os03g0851600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD-40 repeat containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os03g0851600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD-40 repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.49 | 0.179 | 10 | 0.714 | 0.95 | 0.225 | -0.0229 | 1.7 | 0.264 | 6.76 | 0.8693 | 5918 | -- | -- |
| 15.62 | 0.184 | 10.1 | 0.476 | 0.989 | 0.244 | 0.034 | -- | 0.153 | 6.73 | 15.08 | 22295 | -- | -- |
| 14.49 | 0.177 | 10 | 0.714 | 0.949 | 0.227 | -- | 1.7 | 0.264 | 6.77 | 0.8496 | 5914 | -- | -- |
| 15.39 | 0.183 | 10.1 | 0.408 | 0.97 | 0.215 | -- | -- | 0.132 | 6.85 | 20.37 | 22825 | -- | -- |
| 58.3 | 0.358 | 10.1 | 0.434 | -- | 0.216 | -- | 0.299 | 0.232 | -- | 0.8496 | 5914 | -- | -- |
| 17.06 | 0.194 | 10.1 | 0.416 | 0.949 | -- | 0.0258 | -- | 0.215 | 6.87 | -- | -- | -- | -- |
| 17.06 | 0.193 | 10.1 | 0.416 | 0.949 | -- | -- | -- | 0.215 | 6.86 | -- | -- | -- | -- |
| 58.88 | 0.359 | 10.1 | 0.43 | -- | 0.218 | -- | -- | 0.23 | -- | 0.8496 | 5914 | -- | -- |
| 19.52 | 0.206 | 10.1 | -- | 0.95 | 0.249 | -- | -- | 0.0977 | 6.98 | 20.33 | 21320 | -- | -- |
| 64.24 | 0.375 | 10.1 | 0.437 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 21.63 | 0.218 | 10.1 | -- | 0.954 | -- | -- | -- | 0.169 | 6.84 | -- | -- | -- | -- |
| 63.77 | 0.373 | 10.1 | -- | -- | 0.221 | -- | -- | 0.183 | -- | 0.8496 | 5914 | -- | -- |
| 69.27 | 0.388 | 10.1 | -- | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.40 | temperature | 25 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 2 | 14.40 | temperature | 25 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 30 | 14.43 | temperature | 25 | 43200 | < th | dose dependent | sin | 2 | NA |
| 55 | 14.44 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 58 | 14.44 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 115 | 14.44 | temperature | 25 | 43200 | < th | dose dependent | rect. | 4 | 20 |
| 126 | 14.45 | temperature | 20 | 43200 | > th | dose independent | sin | 7 | NA |
| 128 | 14.45 | temperature | 20 | 43200 | > th | dose independent | sin | 4 | NA |
| 131 | 14.45 | temperature | 20 | 43200 | < th | dose independent | sin | 7 | NA |
| 133 | 14.45 | temperature | 20 | 43200 | < th | dose independent | sin | 5 | NA |
| 135 | 14.45 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 138 | 14.45 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 165 | 14.45 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 227 | 14.45 | temperature | 25 | 43200 | < th | dose dependent | no | NA | NA |
| 228 | 14.45 | temperature | 30 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 309 | 14.45 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 353 | 14.46 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 354 | 14.46 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 355 | 14.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 363 | 14.46 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 370 | 14.46 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 371 | 14.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 467 | 14.46 | temperature | 25 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 472 | 14.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 545 | 14.47 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 549 | 14.47 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 550 | 14.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 551 | 14.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 554 | 14.47 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 563 | 14.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 604 | 14.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 614 | 14.47 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 623 | 14.47 | temperature | 20 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 743 | 14.47 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 758 | 14.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 788 | 14.47 | temperature | 10 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 789 | 14.47 | temperature | 10 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 890 | 14.47 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 950 | 14.48 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 953 | 14.48 | temperature | 20 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 970 | 14.48 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 980 | 14.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 4 |