Os03g0851300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Proteasome component region PCI domain containing protein.
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Os03g0851300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Proteasome component region PCI domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.52 | 0.137 | 12.7 | 0.406 | 0.379 | -0.354 | -0.127 | -0.598 | 0.28 | 3.38 | 0.6932 | 114 | -- | -- |
| 8.97 | 0.139 | 12.7 | 0.402 | 0.386 | -0.324 | 0.177 | -- | 0.281 | 3.27 | -4.215 | 122 | -- | -- |
| 8.55 | 0.136 | 12.7 | 0.402 | 0.383 | -0.342 | -- | -0.516 | 0.275 | 3.36 | 0.6503 | 119 | -- | -- |
| 9.07 | 0.14 | 12.7 | 0.398 | 0.386 | -0.327 | -- | -- | 0.279 | 3.31 | -4.7 | 122 | -- | -- |
| 11.42 | 0.157 | 12.7 | 0.426 | -- | -0.663 | -- | -0.458 | 0.321 | -- | -4.335e-05 | 227 | -- | -- |
| 10.24 | 0.15 | 12.7 | 0.399 | 0.554 | -- | 0.177 | -- | 0.264 | 2.56 | -- | -- | -- | -- |
| 10.35 | 0.151 | 12.7 | 0.394 | 0.555 | -- | -- | -- | 0.263 | 2.58 | -- | -- | -- | -- |
| 12.02 | 0.161 | 12.7 | 0.423 | -- | -0.66 | -- | -- | 0.313 | -- | -0.6548 | 238 | -- | -- |
| 13.23 | 0.169 | 12.7 | -- | 0.403 | -0.315 | -- | -- | 0.235 | 3.3 | 0.2995 | 114 | -- | -- |
| 28.38 | 0.249 | 12.7 | 0.418 | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
| 14.44 | 0.178 | 12.7 | -- | 0.562 | -- | -- | -- | 0.219 | 2.59 | -- | -- | -- | -- |
| 16.73 | 0.191 | 12.7 | -- | -- | -0.656 | -- | -- | 0.265 | -- | -5.231 | 230 | -- | -- |
| 32.98 | 0.268 | 12.7 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.35 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 4 | 7.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 16 | 7.59 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 82 | 7.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 13 |
| 83 | 7.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 96 | 7.82 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 106 | 7.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 108 | 7.84 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 237 | 7.96 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 255 | 7.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 273 | 8.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 306 | 8.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 325 | 8.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 393 | 8.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 475 | 8.23 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 14 |
| 526 | 8.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 2 | 21 |
| 801 | 8.45 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 855 | 8.49 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 906 | 8.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 914 | 8.53 | radiation | 1 | 270 | > th | dose dependent | sin | 4 | NA |
| 930 | 8.54 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 968 | 8.55 | radiation | 40 | 90 | < th | dose dependent | rect. | 24 | 23 |