FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0849500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Powdery mildew resistance protein PM3b.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0506) R2 : 0.0853
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.38 (0.246) R2dE : 0.0671 R2E : 0.0763
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.198 (0.109) R2dN8 : 0.00903 R2N8 : 0.0182
σ : 0.945
deviance : 411.37
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.78
memory length : 1390
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.12 0.937 3.36 0.697 0.133 1.71 -0.437 0.211 -0.0803 15.2 0.7709 1416 -- --
398.13 0.929 3.36 0.724 0.128 1.68 -0.422 -- -0.0793 15.5 0.7721 1411 -- --
398.7 0.93 3.36 0.697 0.15 1.7 -- 0.236 -0.0802 15.7 0.7797 1415 -- --
398.29 0.93 3.37 0.758 0.158 1.77 -- -- -0.0595 19.5 0.773 1390 -- --
399.42 0.931 3.36 0.674 -- 1.7 -- 0.244 -0.0892 -- 0.7755 1403 -- --
433.98 0.977 3.41 0.347 0.204 -- -0.234 -- -0.312 14.5 -- -- -- --
434.18 0.976 3.41 0.341 0.204 -- -- -- -0.314 14.5 -- -- -- --
399.43 0.931 3.36 0.708 -- 1.68 -- -- -0.0865 -- 0.7741 1403 -- --
410.21 0.943 3.38 -- 0.171 1.42 -- -- -0.178 19.2 0.78 1382 -- --
436.63 0.976 3.42 0.332 -- -- -- -- -0.319 -- -- -- -- --
437.25 0.978 3.42 -- 0.197 -- -- -- -0.352 14.5 -- -- -- --
411.37 0.945 3.38 -- -- 1.38 -- -- -0.198 -- 0.78 1390 -- --
439.54 0.979 3.42 -- -- -- -- -- -0.356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 388.89 wind 5 14400 < th dose independent rect. 11 2
3 389.40 wind 5 14400 > th dose independent rect. 11 2
21 392.30 wind 5 14400 < th dose independent rect. 8 7
25 393.13 wind 3 14400 > th dose dependent rect. 10 3
41 394.72 wind 5 14400 > th dose dependent rect. 8 7
69 396.79 wind 7 14400 > th dose dependent rect. 9 1
83 397.32 temperature 25 1440 < th dose independent rect. 13 10
88 397.45 temperature 25 1440 > th dose independent rect. 13 10
98 397.79 radiation 1 1440 < th dose dependent rect. 17 23
116 398.16 wind 5 43200 > th dose dependent rect. 11 12
119 398.20 radiation 1 1440 < th dose dependent rect. 6 23
120 398.21 radiation 1 1440 < th dose dependent rect. 6 15
121 398.22 radiation 1 1440 < th dose dependent rect. 6 13
122 398.22 radiation 1 1440 < th dose dependent rect. 6 19
125 398.23 wind 5 43200 > th dose dependent rect. 11 14
133 398.26 humidity 80 43200 < th dose independent rect. 7 9
138 398.29 wind 3 43200 > th dose dependent rect. 20 1
139 398.29 wind 5 43200 < th dose dependent rect. 21 1
142 398.35 wind 5 14400 > th dose independent sin 1 NA
143 398.37 wind 5 43200 < th dose independent rect. 20 1
163 398.57 radiation 1 1440 < th dose dependent rect. 10 21
167 398.61 atmosphere 1015 14400 < th dose independent rect. 21 7
170 398.62 atmosphere 1015 14400 > th dose independent rect. 22 5
171 398.62 atmosphere 1015 14400 < th dose independent rect. 22 5
177 398.63 humidity 80 43200 > th dose independent rect. 7 8
185 398.63 wind 7 43200 < th dose independent rect. 12 15
186 398.64 wind 5 43200 > th dose independent rect. 20 1
187 398.64 atmosphere 1015 14400 > th dose independent rect. 23 2
208 398.66 atmosphere 1015 14400 < th dose independent rect. 23 2
245 398.69 wind 7 43200 < th dose independent rect. 12 13
251 398.70 atmosphere 1015 14400 > th dose independent sin 10 NA
252 398.70 atmosphere 1015 14400 < th dose independent sin 10 NA
253 398.70 temperature 25 14400 > th dose independent rect. 8 1
276 398.72 humidity 80 43200 > th dose independent rect. 6 10
284 398.73 wind 7 43200 < th dose independent sin 20 NA
305 398.74 wind 7 43200 > th dose independent rect. 12 15
328 398.78 temperature 25 14400 < th dose independent rect. 8 1
366 398.82 atmosphere 1015 14400 > th dose dependent rect. 23 8
376 398.83 temperature 20 1440 > th dose dependent rect. 18 2
385 398.84 wind 9 14400 < th dose dependent rect. 10 2
395 398.86 wind 7 43200 > th dose independent sin 20 NA
402 398.86 atmosphere 1015 14400 > th dose dependent rect. 22 11
408 398.87 wind 7 43200 > th dose independent rect. 12 13
435 398.89 wind 7 43200 < th dose independent rect. 8 13
464 398.93 atmosphere 1015 14400 < th dose independent rect. 5 1
475 398.94 radiation 1 1440 < th dose dependent rect. 3 18
476 398.94 radiation 1 1440 < th dose dependent rect. 23 22
477 398.94 radiation 1 1440 < th dose dependent rect. 20 23
485 398.95 radiation 1 1440 < th dose dependent sin 22 NA
487 398.95 radiation 1 1440 < th dose dependent rect. 3 16
492 398.95 radiation 1 1440 < th dose dependent rect. 23 20
494 398.95 radiation 1 1440 < th dose dependent rect. 3 22
513 398.97 radiation 1 1440 < th dose dependent no NA NA
524 398.98 atmosphere 1015 14400 < th dose independent rect. 10 2
532 398.98 atmosphere 1015 14400 > th dose dependent rect. 9 1
550 398.99 atmosphere 1015 14400 > th dose dependent rect. 5 7
555 399.00 wind 5 14400 < th dose independent sin 1 NA
556 399.00 atmosphere 1015 14400 > th dose independent rect. 21 1
558 399.00 atmosphere 1015 14400 < th dose independent rect. 21 1
559 399.00 atmosphere 1015 14400 < th dose independent rect. 2 2
560 399.00 atmosphere 1015 14400 > th dose independent rect. 9 3
570 399.00 atmosphere 1015 14400 < th dose independent rect. 5 7
572 399.00 atmosphere 1015 14400 < th dose independent rect. 1 12
578 399.00 atmosphere 1015 14400 > th dose dependent rect. 7 4
580 399.00 atmosphere 1015 14400 > th dose dependent rect. 1 11
593 399.01 atmosphere 1015 14400 < th dose independent rect. 3 9
607 399.01 atmosphere 1015 14400 > th dose dependent rect. 3 10
684 399.04 atmosphere 1015 14400 > th dose independent rect. 4 1
692 399.04 atmosphere 1015 14400 < th dose independent rect. 8 1
755 399.04 atmosphere 1015 14400 > th dose dependent rect. 7 1
757 399.04 atmosphere 1015 14400 > th dose dependent rect. 24 5
785 399.06 atmosphere 1015 14400 > th dose dependent rect. 1 3
800 399.07 wind 5 43200 > th dose dependent sin 19 NA
828 399.10 radiation 1 4320 < th dose independent rect. 17 1
887 399.15 atmosphere 1015 14400 > th dose dependent sin 7 NA
897 399.17 radiation 1 4320 > th dose independent rect. 17 1
983 399.26 wind 7 43200 < th dose independent rect. 5 17