Os03g0849100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TDRGA-1 (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0849100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to TDRGA-1 (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 602.58 | 1.15 | 7.53 | 0.385 | 2.31 | -2.82 | 2.93 | 0.781 | 0.553 | 19.6 | 69.99 | 1233 | -- | -- |
| 603.18 | 1.14 | 7.55 | 0.276 | 2.36 | -2.79 | 3.02 | -- | 0.518 | 19.7 | 70 | 1213 | -- | -- |
| 625.86 | 1.17 | 7.52 | 0.364 | 2.36 | -2.84 | -- | 1.24 | 0.572 | 19.6 | 69.74 | 1213 | -- | -- |
| 628.64 | 1.17 | 7.54 | 0.205 | 2.33 | -2.75 | -- | -- | 0.524 | 19.6 | 70 | 1224 | -- | -- |
| 890.91 | 1.39 | 7.46 | 0.388 | -- | -2.76 | -- | 1.07 | 0.568 | -- | 69.02 | 1309 | -- | -- |
| 881.22 | 1.39 | 7.59 | -0.358 | 2.3 | -- | 2.75 | -- | 0.307 | 18.6 | -- | -- | -- | -- |
| 900.12 | 1.4 | 7.58 | -0.397 | 2.31 | -- | -- | -- | 0.316 | 18.5 | -- | -- | -- | -- |
| 892.06 | 1.39 | 7.48 | 0.162 | -- | -2.7 | -- | -- | 0.5 | -- | 69.56 | 1311 | -- | -- |
| 627.17 | 1.17 | 7.59 | -- | 2.33 | -2.67 | -- | -- | 0.307 | 19.5 | 69 | 1223 | -- | -- |
| 1177.81 | 1.6 | 7.54 | -0.454 | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
| 904.27 | 1.41 | 7.57 | -- | 2.32 | -- | -- | -- | 0.36 | 18.5 | -- | -- | -- | -- |
| 892.74 | 1.39 | 7.49 | -- | -- | -2.67 | -- | -- | 0.48 | -- | 69.4 | 1311 | -- | -- |
| 1183.25 | 1.61 | 7.53 | -- | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 632.91 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 3 | 634.11 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 7 | 638.23 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 10 | 640.83 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 14 | 641.89 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 15 | 642.06 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 16 | 642.10 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 29 | 642.78 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 62 | 646.23 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 78 | 646.92 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 142 | 648.08 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 154 | 648.28 | humidity | 70 | 1440 | < th | dose independent | sin | 19 | NA |
| 162 | 649.12 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 171 | 650.15 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 172 | 650.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 173 | 650.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 174 | 650.18 | radiation | 40 | 1440 | > th | dose independent | sin | 13 | NA |
| 175 | 650.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 179 | 650.23 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 180 | 650.23 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 189 | 650.54 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 192 | 650.60 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 200 | 651.09 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 221 | 651.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 226 | 651.85 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 244 | 651.93 | radiation | 10 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 248 | 652.02 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 254 | 652.23 | radiation | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 256 | 652.32 | radiation | 30 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 260 | 652.77 | radiation | 10 | 1440 | > th | dose independent | sin | 4 | NA |
| 280 | 653.31 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 285 | 653.41 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 288 | 653.56 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 301 | 653.62 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 369 | 653.65 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 370 | 653.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 372 | 653.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 380 | 653.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 384 | 653.70 | wind | 5 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 392 | 653.72 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 398 | 653.74 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 400 | 653.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 16 |
| 445 | 654.02 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 463 | 654.27 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 466 | 654.39 | radiation | 40 | 1440 | < th | dose dependent | rect. | 13 | 20 |
| 468 | 654.42 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 504 | 654.78 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 507 | 654.82 | temperature | 30 | 14400 | > th | dose dependent | sin | 14 | NA |
| 529 | 655.14 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 556 | 655.27 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 559 | 655.30 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 561 | 655.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 16 |
| 562 | 655.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 563 | 655.31 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 565 | 655.32 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 13 |
| 603 | 655.58 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 604 | 655.58 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 612 | 655.60 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 631 | 655.67 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 662 | 655.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 708 | 655.95 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 712 | 655.97 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 726 | 656.08 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 886 | 657.20 | temperature | 30 | 14400 | < th | dose independent | sin | 18 | NA |
| 908 | 657.28 | radiation | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 986 | 657.57 | temperature | 30 | 14400 | > th | dose independent | sin | 18 | NA |