Os03g0848700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TDRGA-1 (Fragment).
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Os03g0848700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TDRGA-1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.96 | 0.425 | 9.08 | -0.469 | 1.33 | 1.42 | 1.01 | 1.99 | -0.38 | 14.3 | 0.95 | 4342 | -- | -- |
| 85.53 | 0.431 | 9.08 | -0.193 | 1.35 | 1.02 | 1.01 | -- | -0.361 | 14.2 | 1.982 | 4358 | -- | -- |
| 84.96 | 0.429 | 9.08 | -0.485 | 1.26 | 1.44 | -- | 2.14 | -0.391 | 14.6 | 0.9288 | 4285 | -- | -- |
| 89.09 | 0.44 | 9.07 | -0.171 | 1.34 | 0.981 | -- | -- | -0.356 | 14.4 | 2.16 | 4337 | -- | -- |
| 165.47 | 0.602 | 9.09 | -0.499 | -- | -0.661 | -- | -0.641 | -0.572 | -- | 2.03 | 5627 | -- | -- |
| 107.27 | 0.486 | 9.08 | -0.464 | 1.33 | -- | 1.05 | -- | -0.535 | 14.4 | -- | -- | -- | -- |
| 111.3 | 0.494 | 9.08 | -0.436 | 1.33 | -- | -- | -- | -0.528 | 14.4 | -- | -- | -- | -- |
| 166.59 | 0.604 | 9.09 | -0.496 | -- | -0.677 | -- | -- | -0.583 | -- | 3.038 | 5600 | -- | -- |
| 86.08 | 0.432 | 9.05 | -- | 1.28 | 1.02 | -- | -- | -0.271 | 14.2 | 1.44 | 18738 | -- | -- |
| 215.82 | 0.686 | 9.09 | -0.492 | -- | -- | -- | -- | -0.561 | -- | -- | -- | -- | -- |
| 116.3 | 0.504 | 9.07 | -- | 1.34 | -- | -- | -- | -0.48 | 14.4 | -- | -- | -- | -- |
| 172.58 | 0.614 | 9.08 | -- | -- | -0.68 | -- | -- | -0.526 | -- | 2.778 | 17083 | -- | -- |
| 222.2 | 0.696 | 9.08 | -- | -- | -- | -- | -- | -0.507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 3 | 76.85 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 5 | 77.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 6 | 77.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 16 | 77.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 18 | 77.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 22 | 77.54 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 24 | 77.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 17 |
| 37 | 77.57 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 22 |
| 40 | 77.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 48 | 77.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 67 | 77.60 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 76 | 77.61 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 78 | 77.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 18 |
| 85 | 77.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 20 |
| 98 | 77.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 23 |
| 108 | 77.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 142 | 77.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 146 | 77.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 149 | 77.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 169 | 77.64 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 197 | 77.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 246 | 77.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 276 | 77.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 283 | 77.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 284 | 77.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 303 | 77.76 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 353 | 77.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 377 | 77.82 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 414 | 77.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 487 | 77.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 511 | 77.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 520 | 77.96 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 13 |
| 577 | 78.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 586 | 78.06 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 589 | 78.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 590 | 78.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 591 | 78.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 626 | 78.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 642 | 78.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 647 | 78.14 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 657 | 78.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 663 | 78.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 20 |
| 717 | 78.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 722 | 78.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 724 | 78.17 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 725 | 78.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 726 | 78.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 776 | 78.18 | radiation | 1 | 43200 | < th | dose independent | sin | 23 | NA |
| 788 | 78.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 796 | 78.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 799 | 78.21 | radiation | 1 | 43200 | > th | dose independent | sin | 0 | NA |
| 801 | 78.21 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 802 | 78.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 816 | 78.22 | radiation | 1 | 43200 | < th | dose independent | sin | 12 | NA |
| 824 | 78.23 | radiation | 1 | 43200 | > th | dose independent | sin | 12 | NA |
| 909 | 78.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 910 | 78.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 926 | 78.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 954 | 78.31 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 967 | 78.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 990 | 78.32 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 16 |