Os03g0847600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GAMYB-binding protein.
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Os03g0847600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GAMYB-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.2 | 0.349 | 10 | -2.09 | 1.2 | -0.945 | 0.112 | -1.09 | -0.189 | 5.66 | 22.8 | 37 | -- | -- |
| 56.81 | 0.351 | 10 | -2.19 | 1.2 | -0.772 | -0.0354 | -- | -0.204 | 5.69 | 22.88 | 39 | -- | -- |
| 55.23 | 0.346 | 10 | -2.09 | 1.2 | -0.956 | -- | -1.08 | -0.189 | 5.65 | 22.72 | 36 | -- | -- |
| 56.8 | 0.351 | 10.1 | -2.19 | 1.2 | -0.778 | -- | -- | -0.206 | 5.71 | 22.8 | 43 | -- | -- |
| 129.24 | 0.532 | 10.1 | -2.02 | -- | -0.624 | -- | -0.755 | -0.138 | -- | 23.1 | 15 | -- | -- |
| 63.83 | 0.375 | 10 | -2.03 | 1.16 | -- | 0.0846 | -- | -0.109 | 6.05 | -- | -- | -- | -- |
| 63.85 | 0.374 | 10 | -2.03 | 1.16 | -- | -- | -- | -0.11 | 6.04 | -- | -- | -- | -- |
| 130.12 | 0.534 | 10.1 | -2.1 | -- | -0.53 | -- | -- | -0.153 | -- | 23.1 | 15 | -- | -- |
| 167.97 | 0.604 | 9.96 | -- | 1.04 | 0.674 | -- | -- | 0.197 | 6.71 | 40.98 | 9 | -- | -- |
| 134.05 | 0.541 | 10 | -2 | -- | -- | -- | -- | -0.0835 | -- | -- | -- | -- | -- |
| 172.74 | 0.615 | 9.98 | -- | 1.13 | -- | -- | -- | 0.117 | 6.13 | -- | -- | -- | -- |
| 205.78 | 0.668 | 9.96 | -- | -- | 1.45 | -- | -- | 0.303 | -- | 48.69 | 329 | -- | -- |
| 239.45 | 0.722 | 10 | -- | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.11 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 20 |
| 5 | 53.18 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 7 | 53.30 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 20 |
| 15 | 53.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 6 |
| 20 | 53.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 21 | 53.56 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 22 | 53.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 23 | 53.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 27 | 53.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 31 | 53.72 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 17 |
| 40 | 53.86 | humidity | 50 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 43 | 53.88 | humidity | 90 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 48 | 53.95 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 53 | 54.02 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 54 | 54.02 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 59 | 54.07 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 67 | 54.14 | wind | 3 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 75 | 54.19 | humidity | 50 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 82 | 54.23 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 87 | 54.25 | humidity | 50 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 92 | 54.27 | wind | 5 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 98 | 54.29 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 100 | 54.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 101 | 54.29 | humidity | 60 | 270 | > th | dose dependent | rect. | 1 | 9 |
| 104 | 54.31 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 22 | 6 |
| 106 | 54.32 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 111 | 54.33 | humidity | 50 | 90 | > th | dose dependent | rect. | 3 | 10 |
| 137 | 54.42 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 140 | 54.43 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 156 | 54.48 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 162 | 54.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 211 | 54.61 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 265 | 54.75 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 266 | 54.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 275 | 54.79 | humidity | 90 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 277 | 54.79 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 279 | 54.79 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 284 | 54.80 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 16 |
| 285 | 54.80 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 16 |
| 293 | 54.82 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 9 |
| 303 | 54.85 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 328 | 54.88 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 19 |
| 342 | 54.90 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 8 |
| 345 | 54.90 | humidity | 80 | 10 | > th | dose independent | rect. | 4 | 16 |
| 349 | 54.91 | radiation | 1 | 270 | < th | dose independent | rect. | 24 | 22 |
| 350 | 54.91 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 351 | 54.91 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 356 | 54.92 | wind | 5 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 361 | 54.92 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 16 |
| 372 | 54.94 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 16 |
| 373 | 54.94 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 374 | 54.94 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 1 | 21 |
| 396 | 54.96 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 421 | 54.99 | humidity | 50 | 10 | > th | dose dependent | rect. | 4 | 8 |
| 432 | 55.01 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 471 | 55.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 16 |
| 475 | 55.06 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 502 | 55.08 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 10 |
| 507 | 55.08 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 517 | 55.10 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 5 |
| 564 | 55.14 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 16 |
| 566 | 55.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 585 | 55.16 | wind | 3 | 14400 | > th | dose independent | sin | 10 | NA |
| 589 | 55.16 | humidity | 50 | 270 | > th | dose independent | rect. | 2 | 18 |
| 613 | 55.18 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 13 |
| 614 | 55.18 | wind | 5 | 14400 | < th | dose dependent | sin | 10 | NA |
| 643 | 55.21 | wind | 3 | 14400 | < th | dose independent | sin | 10 | NA |
| 650 | 55.21 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 668 | 55.23 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 19 |
| 701 | 55.25 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 11 |
| 716 | 55.26 | wind | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 732 | 55.28 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 789 | 55.33 | humidity | 80 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 792 | 55.33 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 22 |
| 799 | 55.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 810 | 55.34 | humidity | 50 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 862 | 55.37 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 3 |
| 878 | 55.38 | humidity | 90 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 913 | 55.40 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 22 | 6 |
| 955 | 55.43 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 970 | 55.44 | wind | 1 | 14400 | > th | dose dependent | sin | 10 | NA |