Os03g0847500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastid quinol oxidase (Plastid terminal oxidase).
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Os03g0847500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plastid quinol oxidase (Plastid terminal oxidase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.54 | 0.4 | 7.96 | -2.25 | 0.105 | -0.52 | 0.408 | -2.57 | 0.169 | 6.98 | 69.88 | 6081 | -- | -- |
| 80.96 | 0.419 | 7.98 | -2.1 | 0.0643 | -0.604 | 0.543 | -- | 0.163 | 6.27 | 69 | 4804 | -- | -- |
| 72.94 | 0.398 | 7.96 | -2.24 | 0.103 | -0.512 | -- | -2.6 | 0.166 | 6.34 | 69.93 | 6120 | -- | -- |
| 80.69 | 0.418 | 8 | -2.08 | 0.098 | -0.539 | -- | -- | 0.0848 | 5.43 | 67.41 | 3233 | -- | -- |
| 73.49 | 0.399 | 7.96 | -2.24 | -- | -0.538 | -- | -2.57 | 0.173 | -- | 69.95 | 6151 | -- | -- |
| 87.56 | 0.439 | 7.98 | -2.1 | 0.126 | -- | 0.517 | -- | 0.133 | 6.9 | -- | -- | -- | -- |
| 88.25 | 0.44 | 7.98 | -2.09 | 0.129 | -- | -- | -- | 0.131 | 6.55 | -- | -- | -- | -- |
| 80.92 | 0.419 | 7.99 | -2.06 | -- | -0.571 | -- | -- | 0.087 | -- | 67.67 | 3265 | -- | -- |
| 186.31 | 0.636 | 7.91 | -- | 0.16 | -0.766 | -- | -- | 0.436 | 4.76 | 70.97 | 2647 | -- | -- |
| 89.11 | 0.441 | 7.98 | -2.09 | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
| 203.19 | 0.667 | 7.93 | -- | 0.106 | -- | -- | -- | 0.364 | 7.69 | -- | -- | -- | -- |
| 186.2 | 0.636 | 7.92 | -- | -- | -0.814 | -- | -- | 0.403 | -- | 69.69 | 1822 | -- | -- |
| 203.8 | 0.666 | 7.93 | -- | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.79 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 2 | 68.30 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 4 | 68.39 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 5 | 68.51 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 9 | 68.55 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 10 | 68.57 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 26 | 68.79 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 40 | 68.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 55 | 69.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 57 | 69.01 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 63 | 69.05 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 72 | 69.12 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 74 | 69.15 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 82 | 69.19 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 90 | 69.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 91 | 69.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 137 | 69.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 138 | 69.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 146 | 69.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 159 | 69.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 160 | 69.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 162 | 69.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 170 | 69.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 172 | 69.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 194 | 69.89 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 197 | 69.89 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 216 | 70.00 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 220 | 70.02 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 224 | 70.04 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 244 | 70.15 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 261 | 70.21 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 276 | 70.32 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 277 | 70.32 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 282 | 70.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 283 | 70.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 288 | 70.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 290 | 70.40 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 291 | 70.40 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 294 | 70.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 298 | 70.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 299 | 70.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 322 | 70.56 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 323 | 70.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 336 | 70.64 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 337 | 70.64 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 362 | 70.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 364 | 70.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 372 | 70.71 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 395 | 70.79 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 401 | 70.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 446 | 70.98 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 448 | 70.98 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 460 | 71.02 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 468 | 71.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 469 | 71.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 498 | 71.17 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 502 | 71.17 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 523 | 71.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 535 | 71.26 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 538 | 71.28 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 582 | 71.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 609 | 71.50 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 620 | 71.52 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 633 | 71.56 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 669 | 71.67 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 741 | 71.89 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 746 | 71.89 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 9 |
| 758 | 71.92 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 846 | 72.10 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 877 | 72.15 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 905 | 72.19 | wind | 1.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 919 | 72.23 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 923 | 72.26 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 925 | 72.26 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 968 | 72.34 | wind | 5.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 978 | 72.37 | wind | 9.0 | 14400 | < th | dose dependent | sin | 8 | NA |