Os03g0846400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os03g0846400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.84 | 0.328 | 9.81 | -1.35 | 0.155 | 0.958 | -0.913 | -0.662 | -0.543 | 4.15 | 25.8 | 19 | -- | -- |
| 48.97 | 0.326 | 9.8 | -1.28 | 0.15 | 0.915 | -0.818 | -- | -0.523 | 4.21 | 25.88 | 18 | -- | -- |
| 50.78 | 0.332 | 9.8 | -1.26 | 0.171 | 0.968 | -- | 0.225 | -0.518 | 3.29 | 25.81 | 13 | -- | -- |
| 50.79 | 0.332 | 9.8 | -1.28 | 0.164 | 0.977 | -- | -- | -0.522 | 3.3 | 25.92 | 13 | -- | -- |
| 51.52 | 0.336 | 9.8 | -1.23 | -- | 0.862 | -- | 0.208 | -0.495 | -- | 26.39 | 9 | -- | -- |
| 61.33 | 0.367 | 9.8 | -1.16 | 0.167 | -- | 1.14 | -- | -0.484 | 16 | -- | -- | -- | -- |
| 64.8 | 0.377 | 9.79 | -1.14 | 0.18 | -- | -- | -- | -0.477 | 14.6 | -- | -- | -- | -- |
| 51.54 | 0.336 | 9.8 | -1.25 | -- | 0.878 | -- | -- | -0.499 | -- | 26.39 | 9 | -- | -- |
| 92.09 | 0.449 | 9.77 | -- | 0.0118 | 0.708 | -- | -- | -0.353 | 6.98 | 26.7 | 3 | -- | -- |
| 66.7 | 0.382 | 9.8 | -1.15 | -- | -- | -- | -- | -0.482 | -- | -- | -- | -- | -- |
| 99.14 | 0.466 | 9.77 | -- | 0.202 | -- | -- | -- | -0.35 | 14.7 | -- | -- | -- | -- |
| 92.1 | 0.448 | 9.77 | -- | -- | 0.704 | -- | -- | -0.353 | -- | 26.7 | 2 | -- | -- |
| 101.53 | 0.47 | 9.77 | -- | -- | -- | -- | -- | -0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.46 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 6 | 46.08 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 13 | 46.67 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 14 | 46.68 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 20 | 46.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 24 | 46.93 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 134 | 49.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 135 | 49.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 144 | 49.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 232 | 49.40 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 241 | 49.44 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 244 | 49.45 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 284 | 49.57 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 294 | 49.59 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 630 | 50.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 640 | 50.47 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 709 | 50.81 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 792 | 51.11 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 837 | 51.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 844 | 51.31 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 948 | 51.72 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 974 | 51.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 981 | 51.79 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 991 | 51.82 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 6 |