Os03g0845700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RPB17 (Fragment).
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Os03g0845700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RPB17 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.98 | 0.282 | 11.6 | 0.489 | 0.602 | -0.451 | 0.312 | -0.552 | 0.0872 | 22.7 | 69.48 | 2636 | -- | -- |
| 36.34 | 0.281 | 11.6 | 0.509 | 0.607 | -0.502 | 0.291 | -- | 0.107 | 22.6 | 72.41 | 2622 | -- | -- |
| 36.35 | 0.281 | 11.6 | 0.474 | 0.603 | -0.448 | -- | -0.488 | 0.0954 | 22.5 | 70.51 | 2662 | -- | -- |
| 36.62 | 0.282 | 11.6 | 0.496 | 0.607 | -0.49 | -- | -- | 0.112 | 22.5 | 72.66 | 2623 | -- | -- |
| 56.31 | 0.35 | 11.5 | 0.44 | -- | -0.436 | -- | -0.544 | 0.145 | -- | 78.7 | 2981 | -- | -- |
| 42.8 | 0.307 | 11.5 | 0.428 | 0.549 | -- | 0.153 | -- | 0.178 | 22.3 | -- | -- | -- | -- |
| 42.89 | 0.307 | 11.5 | 0.423 | 0.549 | -- | -- | -- | 0.178 | 22.3 | -- | -- | -- | -- |
| 56.28 | 0.349 | 11.5 | 0.504 | -- | -0.426 | -- | -- | 0.156 | -- | 79.6 | 1547 | -- | -- |
| 42.88 | 0.305 | 11.6 | -- | 0.614 | -0.477 | -- | -- | 0.122 | 22.6 | 85 | 2616 | -- | -- |
| 61.25 | 0.366 | 11.5 | 0.431 | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
| 47.6 | 0.323 | 11.6 | -- | 0.552 | -- | -- | -- | 0.131 | 22.3 | -- | -- | -- | -- |
| 59.97 | 0.361 | 11.6 | -- | -- | -0.569 | -- | -- | 0.129 | -- | 69.62 | 28916 | -- | -- |
| 66.15 | 0.38 | 11.5 | -- | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.71 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 6 |
| 3 | 35.73 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 13 |
| 13 | 35.99 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 28 | 36.01 | radiation | 20.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 29 | 36.06 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 30 | 36.11 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 35 | 36.18 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 56 | 36.25 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 64 | 36.34 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 4 |
| 69 | 36.41 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 74 | 36.43 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 75 | 36.43 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 81 | 36.46 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 83 | 36.47 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 19 |
| 84 | 36.48 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 11 |
| 85 | 36.48 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 90 | 36.51 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 92 | 36.51 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 15 |
| 105 | 36.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 107 | 36.55 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 111 | 36.56 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 112 | 36.57 | humidity | 70.0 | 720 | > th | dose independent | rect. | 9 | 19 |
| 122 | 36.60 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 5 |
| 145 | 36.63 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 160 | 36.65 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 23 | 9 |
| 193 | 36.68 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 200 | 36.69 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 206 | 36.69 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 218 | 36.71 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 229 | 36.71 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 238 | 36.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 242 | 36.73 | wind | 3.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 255 | 36.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 275 | 36.75 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 294 | 36.76 | wind | 3.0 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 299 | 36.76 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 306 | 36.76 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 13 |
| 309 | 36.77 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 315 | 36.77 | wind | 9.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 334 | 36.77 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 337 | 36.78 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 345 | 36.78 | wind | 1.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 347 | 36.78 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 367 | 36.79 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 392 | 36.81 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 393 | 36.81 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 410 | 36.82 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 415 | 36.82 | wind | 3.0 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 438 | 36.83 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 9 |
| 455 | 36.84 | wind | 3.0 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 467 | 36.85 | wind | 3.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 492 | 36.86 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 498 | 36.86 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 524 | 36.87 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 525 | 36.87 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 530 | 36.87 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 531 | 36.87 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 605 | 36.91 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 614 | 36.92 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 623 | 36.92 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 632 | 36.93 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 660 | 36.94 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 667 | 36.94 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 668 | 36.94 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 689 | 36.95 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 712 | 36.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 716 | 36.96 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 718 | 36.96 | radiation | 40.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 729 | 36.96 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 752 | 36.97 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 14 |
| 755 | 36.98 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 771 | 36.98 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 9 |
| 780 | 36.98 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 17 |
| 810 | 37.00 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 815 | 37.00 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 852 | 37.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 873 | 37.02 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 893 | 37.02 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 895 | 37.02 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 20 |
| 914 | 37.02 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 17 |
| 917 | 37.03 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 935 | 37.03 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 964 | 37.04 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 6 |