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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0845600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 17 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.46 (0.0481) R2 : 0.685
β1 : 3.21 (0.178) R2dD : 0.243 R2D : 0.0925
β2 : 1.96 (0.135) R2dC : 0.202 R2C : 0.29
β3 : -1.74 (0.204) R2dE : 0.073 R2E : 0.0754
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.6 (0.105) R2dN8 : 0.231 R2N8 : 0.0677
σ : 0.891
deviance : 366.28
__
_____
C
peak time of C : 1.51
E
wheather : temperature
threshold : 23.78
memory length : 89
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
358.71 0.89 5.41 3.75 1.9 -2.15 0.183 4.58 1.68 1.49 24.91 80 -- --
365.85 0.891 5.46 3.18 1.96 -1.71 -0.301 -- 1.6 1.51 23.75 88 -- --
358.83 0.882 5.41 3.73 1.89 -2.16 -- 4.43 1.68 1.47 24.9 80 -- --
366.28 0.891 5.46 3.21 1.96 -1.74 -- -- 1.6 1.51 23.78 89 -- --
497.7 1.04 5.3 4.27 -- -4.02 -- 5.93 2.03 -- 24.32 22 -- --
416.31 0.957 5.5 2.9 2.61 -- 0.208 -- 1.38 2.07 -- -- -- --
416.48 0.956 5.5 2.89 2.61 -- -- -- 1.38 2.07 -- -- -- --
515.43 1.06 5.39 3.52 -- -3.61 -- -- 1.85 -- 24 9 -- --
622.41 1.17 5.56 -- 2.31 -0.956 -- -- 1.11 1.98 25.22 82 -- --
824.89 1.34 5.48 3 -- -- -- -- 1.44 -- -- -- -- --
636.86 1.18 5.58 -- 2.66 -- -- -- 1.06 2.09 -- -- -- --
833.24 1.34 5.5 -- -- -3.04 -- -- 1.34 -- 24.5 7 -- --
1062.36 1.52 5.55 -- -- -- -- -- 1.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 347.35 temperature 25 720 > th dose dependent rect. 6 3
2 347.51 temperature 25 720 > th dose dependent rect. 7 1
8 348.87 temperature 25 90 > th dose dependent rect. 15 22
17 354.05 temperature 25 90 > th dose dependent sin 10 NA
18 354.09 temperature 30 90 < th dose independent rect. 11 20
20 354.50 temperature 30 270 < th dose independent rect. 9 21
31 356.12 temperature 30 270 < th dose independent rect. 11 18
33 356.42 wind 7 43200 < th dose dependent rect. 11 1
39 357.04 temperature 15 90 > th dose dependent rect. 7 16
40 357.09 temperature 10 90 > th dose dependent rect. 7 14
52 357.95 wind 1 43200 > th dose dependent rect. 11 1
55 358.21 wind 5 14400 > th dose independent rect. 7 6
61 358.53 temperature 25 720 > th dose independent rect. 6 3
62 358.53 temperature 15 10 > th dose dependent rect. 7 15
63 358.57 temperature 25 90 > th dose dependent rect. 6 21
67 358.71 wind 5 14400 > th dose dependent rect. 8 4
80 358.88 temperature 25 90 > th dose dependent no NA NA
101 359.12 wind 5 14400 < th dose independent rect. 7 6
104 359.16 temperature 25 720 > th dose independent rect. 7 1
120 359.30 wind 9 14400 > th dose dependent rect. 10 1
151 359.68 wind 5 14400 > th dose dependent rect. 10 2
302 362.00 temperature 25 720 > th dose dependent rect. 21 13
311 362.17 wind 5 43200 < th dose dependent rect. 8 5
328 362.34 wind 5 43200 < th dose dependent rect. 9 3
379 363.33 temperature 30 270 < th dose independent rect. 10 8
394 363.62 wind 3 43200 > th dose dependent rect. 5 11
415 363.76 temperature 30 43200 > th dose dependent rect. 12 1
424 363.85 wind 5 43200 < th dose independent rect. 5 11
453 364.12 wind 5 43200 > th dose independent rect. 5 12
469 364.30 radiation 10 270 < th dose dependent rect. 19 23
487 364.42 temperature 25 1440 > th dose dependent rect. 15 3
513 364.61 wind 5 43200 < th dose independent sin 1 NA
543 364.69 wind 5 43200 > th dose independent sin 1 NA
551 364.75 radiation 10 270 > th dose independent rect. 16 17
553 364.79 wind 3 43200 > th dose dependent sin 2 NA
575 364.95 temperature 30 43200 < th dose independent rect. 9 1
581 364.96 radiation 1 43200 < th dose dependent rect. 22 5
587 365.00 radiation 1 43200 < th dose dependent rect. 20 7
630 365.25 temperature 25 720 > th dose dependent sin 7 NA
632 365.28 temperature 30 43200 > th dose dependent sin 7 NA
633 365.28 humidity 80 43200 < th dose dependent rect. 2 6
639 365.32 temperature 30 90 < th dose independent rect. 13 18
665 365.40 temperature 25 1440 > th dose independent rect. 18 4
683 365.51 wind 9 43200 < th dose dependent rect. 3 12
687 365.55 wind 5 43200 < th dose dependent rect. 21 1
709 365.65 atmosphere 995 43200 > th dose independent rect. 15 6
717 365.68 atmosphere 995 43200 > th dose independent rect. 15 4
732 365.76 humidity 70 90 > th dose independent rect. 11 20
739 365.79 temperature 30 43200 > th dose independent rect. 9 1
745 365.80 atmosphere 995 43200 < th dose independent rect. 15 4
820 366.00 wind 5 43200 > th dose independent rect. 5 17
835 366.06 temperature 10 720 > th dose dependent rect. 6 3
880 366.32 temperature 25 43200 > th dose dependent rect. 1 1
888 366.34 temperature 30 43200 < th dose independent rect. 19 15
894 366.37 temperature 30 43200 < th dose independent rect. 5 5
901 366.39 temperature 30 43200 < th dose independent rect. 3 7
902 366.39 temperature 30 43200 < th dose independent rect. 1 9
909 366.42 wind 5 43200 < th dose independent rect. 5 17
922 366.46 temperature 25 1440 < th dose independent rect. 18 4
973 366.58 wind 9 43200 < th dose dependent rect. 20 2
990 366.63 radiation 1 43200 < th dose dependent rect. 23 1