Os03g0845100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant MuDR transposase domain containing protein.
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Os03g0845100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant MuDR transposase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 329.83 | 0.853 | 4.06 | 0.489 | 0.617 | 1.4 | 0.185 | 1.27 | 0.356 | 10.9 | 26.42 | 214 | -- | -- |
| 331.44 | 0.848 | 4.03 | 0.722 | 0.567 | 1.36 | -0.0165 | -- | 0.415 | 11.1 | 27.23 | 264 | -- | -- |
| 329.85 | 0.846 | 4.06 | 0.519 | 0.604 | 1.4 | -- | 1.15 | 0.364 | 11.1 | 26.7 | 229 | -- | -- |
| 331.43 | 0.848 | 4.04 | 0.719 | 0.573 | 1.35 | -- | -- | 0.41 | 11.1 | 27.22 | 261 | -- | -- |
| 338.59 | 0.857 | 4.08 | 0.483 | -- | 1.35 | -- | 0.932 | 0.34 | -- | 28.5 | 699 | -- | -- |
| 357.3 | 0.886 | 4.1 | 0.358 | 0.605 | -- | 0.236 | -- | 0.111 | 8.85 | -- | -- | -- | -- |
| 357.49 | 0.885 | 4.1 | 0.367 | 0.603 | -- | -- | -- | 0.111 | 8.92 | -- | -- | -- | -- |
| 336.53 | 0.854 | 4.06 | 0.774 | -- | 1.64 | -- | -- | 0.362 | -- | 44.06 | 704 | -- | -- |
| 343.58 | 0.863 | 4.08 | -- | 0.577 | 1.04 | -- | -- | 0.268 | 10.5 | 26.9 | 258 | -- | -- |
| 378.31 | 0.909 | 4.12 | 0.366 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 361.03 | 0.889 | 4.11 | -- | 0.604 | -- | -- | -- | 0.0703 | 8.88 | -- | -- | -- | -- |
| 350.76 | 0.872 | 4.09 | -- | -- | 1.35 | -- | -- | 0.24 | -- | 54.71 | 673 | -- | -- |
| 381.85 | 0.912 | 4.13 | -- | -- | -- | -- | -- | 0.0746 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 325.01 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 3 | 325.85 | temperature | 10.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 5 | 326.20 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 22 | 328.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 24 | 328.31 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 26 | 328.38 | temperature | 20.0 | 720 | > th | dose independent | rect. | 15 | 12 |
| 31 | 328.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 19 |
| 55 | 329.00 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 56 | 329.04 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 9 |
| 64 | 329.22 | temperature | 15.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 67 | 329.24 | temperature | 20.0 | 720 | > th | dose independent | sin | 14 | NA |
| 73 | 329.27 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 85 | 329.36 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 104 | 329.58 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 114 | 329.76 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 128 | 329.89 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 7 |
| 133 | 329.94 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 4 |
| 153 | 330.09 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 160 | 330.15 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 168 | 330.21 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 11 |
| 198 | 330.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 221 | 330.50 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 222 | 330.50 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 223 | 330.50 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 279 | 330.79 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 302 | 330.88 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 22 | 5 |
| 308 | 330.90 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 348 | 331.02 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 353 | 331.04 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 379 | 331.08 | temperature | 20.0 | 720 | < th | dose independent | rect. | 14 | 15 |
| 389 | 331.09 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 11 |
| 417 | 331.14 | temperature | 20.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 484 | 331.26 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 493 | 331.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 502 | 331.29 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 513 | 331.30 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 557 | 331.38 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 576 | 331.40 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 607 | 331.46 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 608 | 331.46 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 626 | 331.49 | temperature | 20.0 | 720 | < th | dose independent | sin | 14 | NA |
| 636 | 331.50 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 645 | 331.51 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 692 | 331.58 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 695 | 331.58 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 708 | 331.60 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 9 | NA |
| 753 | 331.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 815 | 331.73 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 876 | 331.83 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |