Os03g0844000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0844000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.29 | 0.71 | 8.05 | 0.213 | 3.38 | 0.793 | -1.48 | 6.88 | -0.0377 | 20.6 | 38.49 | 133 | -- | -- |
| 263.26 | 0.761 | 8.01 | 0.202 | 3.33 | -0.301 | -2.36 | -- | 0.00204 | 20.6 | 38.49 | 133 | -- | -- |
| 234.01 | 0.712 | 8.06 | 0.222 | 3.42 | 0.869 | -- | 7.2 | -0.0728 | 20.7 | 32.23 | 129 | -- | -- |
| 268.6 | 0.768 | 8.02 | 0.166 | 3.32 | -1.88 | -- | -- | -0.0394 | 20.4 | 56.19 | 617 | -- | -- |
| 634.92 | 1.17 | 7.98 | 0.826 | -- | 2.89 | -- | 1.12 | -0.0952 | -- | -2.04e-05 | 884 | -- | -- |
| 264.34 | 0.762 | 8.01 | 0.21 | 3.36 | -- | -2.39 | -- | 0.00726 | 20.6 | -- | -- | -- | -- |
| 282.71 | 0.787 | 8.01 | 0.29 | 3.37 | -- | -- | -- | 0.00908 | 20.5 | -- | -- | -- | -- |
| 613.43 | 1.15 | 8 | 0.0483 | -- | 2.93 | -- | -- | -0.361 | -- | -5.7 | 898 | -- | -- |
| 267.99 | 0.762 | 8.01 | -- | 3.36 | -1.64 | -- | -- | -0.00131 | 20.5 | 54.15 | 1600 | -- | -- |
| 920.12 | 1.42 | 7.92 | 0.277 | -- | -- | -- | -- | -0.0225 | -- | -- | -- | -- | -- |
| 284.93 | 0.79 | 8.02 | -- | 3.37 | -- | -- | -- | -0.0232 | 20.5 | -- | -- | -- | -- |
| 613.49 | 1.15 | 8 | -- | -- | 2.93 | -- | -- | -0.367 | -- | -4.604 | 900 | -- | -- |
| 922.14 | 1.42 | 7.93 | -- | -- | -- | -- | -- | -0.0532 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.21 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 3 | 223.36 | radiation | 40 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 9 | 224.92 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 3 |
| 52 | 225.79 | radiation | 40 | 270 | > th | dose dependent | sin | 9 | NA |
| 54 | 225.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 125 | 228.84 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 19 |
| 133 | 229.37 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 21 |
| 187 | 229.56 | radiation | 30 | 10 | < th | dose dependent | sin | 9 | NA |
| 188 | 229.63 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 3 |
| 189 | 229.63 | radiation | 40 | 270 | > th | dose independent | rect. | 15 | 21 |
| 210 | 229.76 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 212 | 229.83 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 8 |
| 216 | 229.99 | wind | 5 | 270 | < th | dose independent | rect. | 9 | 8 |
| 223 | 230.15 | humidity | 50 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 224 | 230.16 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 8 |
| 253 | 230.89 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 14 |
| 263 | 231.15 | radiation | 30 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 264 | 231.16 | radiation | 40 | 270 | < th | dose independent | sin | 6 | NA |
| 299 | 231.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 323 | 231.52 | radiation | 40 | 90 | > th | dose dependent | no | NA | NA |
| 505 | 231.70 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 719 | 232.00 | wind | 9 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 720 | 232.01 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 14 |
| 758 | 232.20 | radiation | 40 | 270 | > th | dose independent | sin | 9 | NA |
| 762 | 232.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 13 |
| 785 | 232.31 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 792 | 232.35 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 11 |
| 805 | 232.51 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 18 |