Os03g0843400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 30S ribosomal protein S6, chloroplast precursor (Fragment).
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Os03g0843400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 30S ribosomal protein S6, chloroplast precursor (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.21 | 0.421 | 13.3 | -0.279 | 1.75 | 1.06 | 0.266 | 2.87 | -0.658 | 21.5 | 41.17 | 249 | -- | -- |
| 84.08 | 0.427 | 13.3 | -0.362 | 1.7 | 1.07 | 0.113 | -- | -0.67 | 21.6 | 40 | 366 | -- | -- |
| 80.45 | 0.418 | 13.3 | -0.291 | 1.75 | 1.06 | -- | 2.73 | -0.659 | 21.5 | 41.18 | 248 | -- | -- |
| 83.58 | 0.426 | 13.3 | -0.402 | 1.65 | 1.09 | -- | -- | -0.696 | 21.8 | 40.07 | 368 | -- | -- |
| 183.92 | 0.632 | 13.2 | -0.203 | -- | 1.2 | -- | 2.13 | -0.507 | -- | 41.87 | 904 | -- | -- |
| 97.92 | 0.464 | 13.3 | -0.311 | 1.71 | -- | 0.00534 | -- | -0.597 | 20.8 | -- | -- | -- | -- |
| 97.92 | 0.463 | 13.3 | -0.312 | 1.71 | -- | -- | -- | -0.597 | 20.8 | -- | -- | -- | -- |
| 122.15 | 0.515 | 13.1 | -0.887 | -- | 2.21 | -- | -- | -0.764 | -- | 1.95 | 1004 | -- | -- |
| 87.33 | 0.435 | 13.3 | -- | 1.67 | 1.05 | -- | -- | -0.679 | 21.7 | 40.22 | 368 | -- | -- |
| 264.16 | 0.759 | 13.2 | -0.312 | -- | -- | -- | -- | -0.61 | -- | -- | -- | -- | -- |
| 100.48 | 0.469 | 13.3 | -- | 1.71 | -- | -- | -- | -0.562 | 20.8 | -- | -- | -- | -- |
| 115.95 | 0.502 | 13.2 | -- | -- | 2.48 | -- | -- | -0.683 | -- | 2.04 | 1041 | -- | -- |
| 266.73 | 0.762 | 13.2 | -- | -- | -- | -- | -- | -0.575 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.98 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 2 | 75.02 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 5 | 75.15 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 13 | 75.86 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 38 | 76.75 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 23 |
| 59 | 77.56 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 9 |
| 87 | 78.72 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 90 | 78.86 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 114 | 79.26 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 15 |
| 135 | 79.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 136 | 79.56 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 13 |
| 140 | 79.60 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 17 |
| 153 | 79.66 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 8 |
| 200 | 80.09 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 213 | 80.20 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 214 | 80.21 | radiation | 30 | 270 | > th | dose dependent | sin | 3 | NA |
| 217 | 80.26 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 11 |
| 226 | 80.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 234 | 80.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 236 | 80.33 | radiation | 40 | 270 | < th | dose independent | sin | 5 | NA |
| 241 | 80.34 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 19 |
| 245 | 80.36 | radiation | 40 | 270 | > th | dose independent | rect. | 13 | 23 |
| 248 | 80.38 | radiation | 40 | 270 | > th | dose independent | sin | 3 | NA |
| 256 | 80.41 | radiation | 30 | 270 | > th | dose dependent | no | NA | NA |
| 257 | 80.41 | radiation | 30 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 440 | 80.55 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 445 | 80.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 19 |
| 458 | 80.62 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 7 |
| 476 | 80.63 | radiation | 40 | 270 | > th | dose independent | no | NA | NA |
| 625 | 80.68 | radiation | 40 | 270 | < th | dose independent | no | NA | NA |
| 632 | 80.70 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 654 | 80.71 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 658 | 80.74 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 787 | 81.15 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 18 |
| 798 | 81.17 | radiation | 40 | 270 | < th | dose independent | rect. | 13 | 23 |
| 803 | 81.18 | radiation | 40 | 270 | < th | dose independent | rect. | 15 | 23 |
| 829 | 81.20 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |