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Os03g0843300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Late embryogenesis abundant protein 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0159) R2 : 0.399
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.599 (0.0385) R2dC : 0.322 R2C : 0.298
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.256 (0.0333) R2dN8 : 0.101 R2N8 : 0.0762
σ : 0.299
deviance : 40.83
__
_____
C
peak time of C : 10.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.32 0.263 11.4 0.131 0.617 -0.496 -0.43 0.817 0.204 10.1 19.99 2127 -- --
31.71 0.262 11.4 0.187 0.631 -0.765 -0.446 -- 0.199 10.1 19.5 2162 -- --
31.85 0.263 11.4 0.139 0.603 -0.656 -- 0.693 0.209 10.2 19.9 1879 -- --
32.05 0.264 11.4 0.178 0.603 -0.872 -- -- 0.217 10.2 19.68 1865 -- --
53.24 0.342 11.4 0.238 -- -0.962 -- -0.0615 0.242 -- 20 1679 -- --
36.36 0.283 11.4 0.4 0.601 -- -0.378 -- 0.3 10.1 -- -- -- --
36.9 0.284 11.4 0.386 0.601 -- -- -- 0.299 10.2 -- -- -- --
53.24 0.341 11.4 0.237 -- -0.943 -- -- 0.242 -- 20 1679 -- --
32.69 0.266 11.4 -- 0.608 -1.01 -- -- 0.187 10.2 19.72 1892 -- --
58.83 0.358 11.4 0.377 -- -- -- -- 0.298 -- -- -- -- --
40.83 0.299 11.4 -- 0.599 -- -- -- 0.256 10.1 -- -- -- --
54.34 0.343 11.4 -- -- -0.877 -- -- 0.188 -- 18.92 3099 -- --
62.59 0.369 11.4 -- -- -- -- -- 0.256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.38 temperature 20 270 > th dose independent rect. 19 19
3 30.56 temperature 20 720 > th dose independent rect. 14 17
7 30.60 temperature 20 720 > th dose independent rect. 11 20
12 30.66 temperature 20 720 > th dose independent sin 15 NA
42 30.92 temperature 20 720 > th dose independent rect. 19 7
66 31.07 temperature 20 270 > th dose independent sin 9 NA
95 31.21 temperature 20 4320 > th dose independent rect. 18 1
115 31.27 temperature 20 4320 < th dose independent rect. 18 1
135 31.36 radiation 20 14400 < th dose independent rect. 17 3
141 31.37 temperature 15 270 > th dose dependent rect. 19 18
147 31.40 humidity 70 14400 < th dose independent rect. 21 1
160 31.42 wind 7 4320 < th dose independent rect. 9 1
170 31.44 wind 7 4320 > th dose dependent rect. 9 1
172 31.46 temperature 20 720 < th dose independent rect. 9 22
178 31.50 wind 7 4320 > th dose independent rect. 9 1
188 31.52 temperature 20 720 < th dose independent rect. 4 22
189 31.52 temperature 20 720 > th dose independent rect. 3 23
192 31.53 radiation 20 14400 < th dose independent rect. 17 12
211 31.57 humidity 50 43200 < th dose independent rect. 20 13
221 31.60 temperature 20 720 > th dose independent no NA NA
222 31.60 temperature 20 720 < th dose independent no NA NA
227 31.61 humidity 50 43200 > th dose independent rect. 7 1
235 31.61 temperature 15 270 > th dose dependent sin 8 NA
242 31.62 temperature 20 720 < th dose independent rect. 23 23
243 31.63 atmosphere 1010 1440 > th dose independent rect. 10 1
253 31.63 temperature 20 720 < th dose independent rect. 14 23
254 31.63 temperature 20 720 < th dose independent rect. 18 23
256 31.63 humidity 70 14400 < th dose dependent rect. 20 11
258 31.64 humidity 50 43200 > th dose independent rect. 20 13
265 31.64 temperature 20 720 < th dose independent rect. 21 23
267 31.64 humidity 50 14400 < th dose dependent rect. 9 1
276 31.66 humidity 50 43200 < th dose independent rect. 7 2
290 31.68 humidity 50 14400 > th dose independent rect. 24 9
323 31.72 humidity 90 14400 < th dose independent rect. 3 4
343 31.74 humidity 60 43200 > th dose independent rect. 22 3
344 31.74 radiation 20 4320 < th dose independent rect. 24 7
352 31.74 humidity 70 43200 < th dose dependent rect. 22 1
363 31.76 radiation 20 4320 < th dose independent rect. 2 5
364 31.76 humidity 50 43200 > th dose independent rect. 21 6
367 31.76 humidity 50 43200 > th dose independent rect. 20 8
398 31.79 humidity 50 43200 > th dose independent rect. 20 1
399 31.79 humidity 60 43200 > th dose independent rect. 23 1
401 31.79 radiation 1 1440 < th dose independent rect. 13 2
410 31.79 radiation 1 1440 < th dose dependent rect. 13 2
411 31.79 humidity 60 43200 < th dose dependent rect. 21 4
436 31.81 temperature 20 4320 < th dose dependent rect. 19 1
473 31.82 wind 7 43200 > th dose dependent rect. 20 4
482 31.83 temperature 20 1440 < th dose independent rect. 9 15
483 31.83 temperature 20 1440 > th dose independent rect. 6 18
489 31.83 humidity 80 43200 < th dose dependent rect. 7 2
491 31.84 radiation 1 4320 < th dose independent rect. 9 1
492 31.84 humidity 50 43200 < th dose independent rect. 20 9
499 31.84 radiation 1 4320 < th dose dependent rect. 9 1
506 31.85 humidity 90 14400 < th dose independent rect. 2 6
526 31.86 temperature 20 1440 < th dose independent rect. 5 10
536 31.86 temperature 20 720 > th dose independent rect. 21 23
570 31.88 radiation 1 1440 < th dose dependent rect. 10 6
572 31.89 radiation 1 1440 < th dose independent rect. 10 5
573 31.89 wind 9 4320 > th dose independent rect. 4 6
601 31.90 wind 7 43200 > th dose independent rect. 20 4
625 31.91 humidity 90 14400 > th dose independent rect. 4 3
631 31.91 temperature 20 1440 > th dose independent rect. 5 10
644 31.91 temperature 20 4320 < th dose dependent rect. 12 8
653 31.92 temperature 20 1440 < th dose independent rect. 5 14
667 31.92 temperature 20 1440 < th dose dependent rect. 15 13
670 31.93 humidity 60 14400 < th dose independent rect. 19 1
671 31.93 radiation 1 1440 > th dose independent rect. 13 1
672 31.93 wind 7 43200 < th dose independent rect. 20 4
711 31.94 temperature 20 1440 < th dose dependent rect. 10 18
715 31.95 humidity 50 43200 > th dose independent rect. 2 7
745 31.96 temperature 20 1440 > th dose independent rect. 5 14
753 31.96 temperature 20 1440 < th dose dependent rect. 23 1
783 31.97 temperature 20 1440 < th dose dependent sin 14 NA
787 31.97 temperature 15 720 > th dose dependent rect. 19 12
799 31.98 humidity 70 14400 < th dose independent rect. 20 11
830 31.99 humidity 70 14400 > th dose independent rect. 20 11
841 31.99 radiation 10 4320 < th dose dependent rect. 24 5
869 32.00 temperature 20 4320 < th dose dependent rect. 9 12
914 32.02 temperature 20 1440 < th dose independent sin 19 NA
916 32.02 humidity 90 14400 > th dose independent rect. 5 1
980 32.03 temperature 20 4320 < th dose dependent rect. 9 14
988 32.03 temperature 20 1440 < th dose dependent rect. 22 22