Os03g0843000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os03g0843000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.79 | 0.571 | 7.34 | 0.975 | 0.899 | 0.984 | 0.549 | 6.99 | 0.38 | 7.41 | 0.9205 | 1456 | -- | -- |
| 160.39 | 0.59 | 7.18 | 1.84 | 0.739 | 0.893 | 0.222 | -- | 0.698 | 8.44 | 42.35 | 1905 | -- | -- |
| 148.47 | 0.568 | 7.34 | 0.994 | 0.893 | 0.989 | -- | 6.9 | 0.379 | 7.34 | 0.8741 | 1447 | -- | -- |
| 157.51 | 0.585 | 7.22 | 1.77 | 0.708 | 0.902 | -- | -- | 0.604 | 7.59 | 48.92 | 3563 | -- | -- |
| 171.01 | 0.609 | 7.3 | 1.33 | -- | 1.37 | -- | 5.48 | 0.52 | -- | 0.8904 | 3778 | -- | -- |
| 173.77 | 0.618 | 7.22 | 1.8 | 0.876 | -- | 0.313 | -- | 0.537 | 7.45 | -- | -- | -- | -- |
| 174.04 | 0.618 | 7.22 | 1.8 | 0.876 | -- | -- | -- | 0.536 | 7.46 | -- | -- | -- | -- |
| 167.73 | 0.603 | 7.22 | 1.91 | -- | 1.15 | -- | -- | 0.665 | -- | 33.51 | 838 | -- | -- |
| 223.79 | 0.697 | 7.22 | -- | 0.717 | 0.961 | -- | -- | 0.638 | 7.25 | 83.96 | 16589 | -- | -- |
| 215.01 | 0.685 | 7.24 | 1.82 | -- | -- | -- | -- | 0.55 | -- | -- | -- | -- | -- |
| 259.83 | 0.754 | 7.27 | -- | 0.893 | -- | -- | -- | 0.335 | 7.33 | -- | -- | -- | -- |
| 257.91 | 0.748 | 7.21 | -- | -- | 1.05 | -- | -- | 0.702 | -- | 71.21 | 16614 | -- | -- |
| 302.17 | 0.811 | 7.29 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 2 | 139.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 5 |
| 3 | 139.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 8 | 139.56 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 9 | 139.56 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 10 | 139.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 18 | 139.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 31 | 139.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 39 | 140.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 42 | 140.12 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 64 | 140.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 66 | 140.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 67 | 140.45 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 73 | 140.52 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 76 | 140.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 116 | 140.92 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 124 | 140.98 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 128 | 141.06 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 197 | 141.85 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 310 | 142.90 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 339 | 143.17 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 364 | 143.42 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 18 | NA |
| 365 | 143.42 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 18 | NA |
| 366 | 143.42 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 367 | 143.42 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 368 | 143.42 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 453 | 143.95 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 495 | 144.31 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 561 | 144.70 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 604 | 145.03 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 610 | 145.14 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 642 | 145.39 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 662 | 145.56 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 675 | 145.66 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 714 | 145.93 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 715 | 145.93 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 770 | 146.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 790 | 146.39 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 804 | 146.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 806 | 146.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 818 | 146.59 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 854 | 146.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 872 | 146.90 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 8 |
| 877 | 146.91 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 12 |
| 883 | 146.94 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 886 | 146.94 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 888 | 146.95 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 16 | NA |
| 916 | 147.13 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 15 | 8 |
| 919 | 147.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 923 | 147.20 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 935 | 147.25 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 11 | 13 |
| 947 | 147.28 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 951 | 147.29 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 11 | 8 |
| 957 | 147.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 959 | 147.32 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 960 | 147.32 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 961 | 147.33 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 13 | 16 |
| 964 | 147.34 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 965 | 147.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 966 | 147.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 967 | 147.36 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 969 | 147.36 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 13 | 11 |
| 986 | 147.39 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 13 | 6 |
| 998 | 147.41 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |