Os03g0841800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Shaggy-related protein kinase kappa (EC 2.7.1.-) (ASK-kappa) (AtK-1).
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Os03g0841800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Shaggy-related protein kinase kappa (EC 2.7.1.-) (ASK-kappa) (AtK-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.74 | 0.261 | 10.8 | -0.516 | 1.29 | -0.137 | 0.518 | -1.02 | -0.114 | 22.9 | 998.8 | 4625 | -- | -- |
| 29.44 | 0.253 | 10.8 | -0.471 | 1.28 | -0.47 | 0.538 | -- | -0.146 | 22.9 | 1005 | 12871 | -- | -- |
| 31.88 | 0.263 | 10.8 | -0.532 | 1.29 | -0.129 | -- | -1 | -0.114 | 22.9 | 998.7 | 4662 | -- | -- |
| 30.66 | 0.258 | 10.8 | -0.491 | 1.28 | -0.466 | -- | -- | -0.141 | 22.9 | 1005 | 12778 | -- | -- |
| 134.1 | 0.539 | 10.7 | -0.487 | -- | -0.267 | -- | -1.04 | -0.109 | -- | 998.2 | 8911 | -- | -- |
| 33.63 | 0.272 | 10.7 | -0.523 | 1.29 | -- | 0.514 | -- | -0.0951 | 22.9 | -- | -- | -- | -- |
| 34.74 | 0.276 | 10.7 | -0.543 | 1.29 | -- | -- | -- | -0.0966 | 22.9 | -- | -- | -- | -- |
| 131.82 | 0.535 | 10.7 | -0.487 | -- | -0.53 | -- | -- | -0.134 | -- | 1006 | 13020 | -- | -- |
| 35.16 | 0.276 | 10.7 | -- | 1.29 | -0.432 | -- | -- | 0.0717 | 22.9 | 1009 | 45201 | -- | -- |
| 137.64 | 0.548 | 10.7 | -0.516 | -- | -- | -- | -- | -0.0877 | -- | -- | -- | -- | -- |
| 42.53 | 0.305 | 10.7 | -- | 1.28 | -- | -- | -- | -0.0361 | 22.9 | -- | -- | -- | -- |
| 137.2 | 0.546 | 10.7 | -- | -- | -0.635 | -- | -- | -0.0973 | -- | 1005 | 13004 | -- | -- |
| 144.66 | 0.561 | 10.7 | -- | -- | -- | -- | -- | -0.0305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.23 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 2 | 29.24 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 6 | 29.29 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 8 | 29.31 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 15 |
| 9 | 29.31 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 15 | 29.36 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 21 | 29.38 | wind | 9 | 14400 | > th | dose dependent | rect. | 14 | 20 |
| 22 | 29.39 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 28 | 29.40 | wind | 9 | 14400 | > th | dose dependent | sin | 13 | NA |
| 29 | 29.40 | wind | 9 | 14400 | > th | dose dependent | rect. | 14 | 16 |
| 50 | 29.48 | wind | 9 | 14400 | > th | dose independent | sin | 13 | NA |
| 56 | 29.49 | wind | 9 | 14400 | > th | dose dependent | rect. | 14 | 11 |
| 59 | 29.49 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 15 |
| 80 | 29.54 | wind | 9 | 14400 | < th | dose independent | sin | 13 | NA |
| 92 | 29.55 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 93 | 29.55 | wind | 9 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 116 | 29.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 164 | 29.64 | wind | 9 | 14400 | > th | dose independent | rect. | 14 | 11 |
| 186 | 29.67 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 190 | 29.67 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 205 | 29.68 | wind | 9 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 209 | 29.69 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 210 | 29.69 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 213 | 29.69 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 225 | 29.70 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 240 | 29.71 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 242 | 29.71 | wind | 9 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 245 | 29.71 | wind | 9 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 246 | 29.71 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 249 | 29.71 | wind | 9 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 260 | 29.72 | wind | 5 | 14400 | > th | dose independent | sin | 16 | NA |
| 261 | 29.72 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 265 | 29.72 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 283 | 29.72 | wind | 5 | 14400 | > th | dose independent | rect. | 1 | 18 |
| 287 | 29.72 | wind | 5 | 14400 | > th | dose independent | rect. | 23 | 20 |
| 327 | 29.74 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 333 | 29.74 | wind | 5 | 14400 | < th | dose independent | rect. | 1 | 18 |
| 344 | 29.75 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 368 | 29.76 | wind | 5 | 14400 | < th | dose independent | sin | 16 | NA |
| 386 | 29.76 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 23 | 19 |
| 387 | 29.76 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 389 | 29.76 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 437 | 29.78 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 462 | 29.79 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 16 |
| 466 | 29.79 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 24 | 18 |
| 473 | 29.79 | wind | 5 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 480 | 29.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 483 | 29.80 | wind | 9 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 517 | 29.81 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 537 | 29.81 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 16 |
| 548 | 29.82 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 4 | NA |
| 551 | 29.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 590 | 29.83 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 611 | 29.83 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 629 | 29.84 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 664 | 29.84 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 669 | 29.84 | wind | 9 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 671 | 29.84 | wind | 9 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 676 | 29.85 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 722 | 29.86 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 4 | NA |
| 763 | 29.87 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 791 | 29.87 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 804 | 29.87 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 806 | 29.87 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 810 | 29.87 | wind | 9 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 853 | 29.88 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 888 | 29.89 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 971 | 29.90 | wind | 5 | 14400 | > th | dose independent | rect. | 6 | 23 |