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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0841100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.14 (0.0286) R2 : 0.481
β1 : -1.08 (0.105) R2dD : 0.125 R2D : 0.129
β2 : 1.18 (0.0688) R2dC : 0.334 R2C : 0.324
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.199 (0.061) R2dN8 : 0.0163 R2N8 : 0.0303
σ : 0.537
deviance : 131.61
__
_____
C
peak time of C : 1.67
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.05 0.517 8.13 -1.03 0.597 0.655 0.139 0.287 0.211 3.98 0.42 36 -- --
121.4 0.513 8.13 -1.03 0.598 0.65 0.392 -- 0.211 3.85 0.4099 35 -- --
121.09 0.513 8.13 -1.03 0.597 0.657 -- 0.335 0.21 4.03 0.4018 35 -- --
121.78 0.514 8.13 -1.03 0.599 0.657 -- -- 0.21 4.04 0.4013 35 -- --
124.99 0.521 8.13 -1.07 -- 0.99 -- 0.212 0.261 -- 0.3771 201 -- --
130.16 0.535 8.14 -1.06 1.18 -- 0.605 -- 0.203 1.64 -- -- -- --
131.61 0.537 8.14 -1.08 1.18 -- -- -- 0.199 1.67 -- -- -- --
125.24 0.521 8.13 -1 -- 0.978 -- -- 0.251 -- 0.3099 202 -- --
149.21 0.569 8.12 -- 0.57 0.666 -- -- 0.254 4.04 0.1324 38 -- --
216.22 0.687 8.13 -1.03 -- -- -- -- 0.225 -- -- -- -- --
162.18 0.596 8.12 -- 1.16 -- -- -- 0.319 1.65 -- -- -- --
150.61 0.572 8.12 -- -- 0.958 -- -- 0.306 -- 0.13 211 -- --
244.17 0.729 8.1 -- -- -- -- -- 0.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.76 temperature 25.0 30 > th dose dependent rect. 6 1
3 110.67 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 110.84 radiation 10.0 30 < th dose independent rect. 6 1
5 113.76 wind 1.0 30 > th dose dependent rect. 6 1
7 114.95 humidity 90.0 30 < th dose dependent rect. 6 1
8 115.13 temperature 25.0 30 > th dose dependent rect. 4 3
11 115.74 atmosphere 1010.0 30 < th dose dependent rect. 6 1
12 116.09 wind 3.0 30 > th dose independent rect. 6 1
16 116.67 temperature 25.0 30 > th dose independent rect. 6 1
17 116.68 radiation 20.0 30 < th dose dependent rect. 6 1
20 117.26 radiation 1.0 10 > th dose dependent rect. 6 1
25 118.00 atmosphere 1005.0 30 > th dose independent rect. 6 1
27 118.17 humidity 90.0 30 < th dose independent rect. 6 1
28 118.20 wind 9.0 1440 < th dose independent rect. 7 1
29 118.20 temperature 10.0 1440 > th dose independent rect. 7 1
33 118.20 temperature 30.0 1440 < th dose independent rect. 7 1
37 118.20 humidity 50.0 1440 > th dose independent rect. 7 1
42 118.20 atmosphere 995.0 1440 > th dose independent rect. 7 1
43 118.20 atmosphere 1015.0 1440 < th dose independent rect. 7 1
44 118.20 temperature 10.0 1440 > th dose independent rect. 8 23
47 118.24 temperature 25.0 270 < th dose independent rect. 4 2
49 118.31 temperature 25.0 720 > th dose independent rect. 24 1
51 118.41 humidity 80.0 30 > th dose independent rect. 6 1
52 118.44 radiation 1.0 30 > th dose independent rect. 6 1
54 118.46 humidity 90.0 270 > th dose independent rect. 4 2
55 118.49 wind 5.0 30 < th dose independent rect. 6 1
58 118.49 temperature 10.0 30 > th dose independent rect. 6 1
60 118.49 temperature 30.0 30 < th dose independent rect. 6 1
61 118.49 humidity 50.0 30 > th dose independent rect. 6 1
69 118.49 precipitation 0.1 30 < th dose independent rect. 6 1
70 118.49 temperature 10.0 30 > th dose independent rect. 7 23
71 118.49 precipitation 0.1 30 < th dose dependent rect. 6 1
76 118.68 wind 1.0 30 < th dose independent rect. 6 1
77 118.68 temperature 25.0 270 < th dose independent rect. 3 4
81 118.82 radiation 1.0 30 > th dose independent rect. 16 19
82 118.84 radiation 1.0 30 > th dose independent rect. 12 23
84 118.92 temperature 25.0 30 > th dose dependent rect. 2 5
88 119.10 radiation 1.0 30 > th dose independent sin 11 NA
89 119.11 humidity 50.0 30 > th dose dependent rect. 6 1
90 119.12 temperature 25.0 1440 < th dose independent rect. 24 2
91 119.12 radiation 1.0 30 > th dose independent rect. 14 21
96 119.25 wind 9.0 30 < th dose dependent rect. 6 1
103 119.43 wind 3.0 10 < th dose dependent rect. 5 5
105 119.47 atmosphere 995.0 30 > th dose dependent rect. 6 1
112 119.62 temperature 25.0 1440 < th dose independent rect. 24 5
113 119.63 radiation 1.0 30 < th dose independent sin 11 NA
119 119.86 humidity 80.0 720 > th dose independent rect. 19 1
121 119.87 radiation 1.0 30 < th dose dependent sin 9 NA
131 120.00 radiation 1.0 30 < th dose dependent sin 11 NA
132 120.05 wind 1.0 90 < th dose independent rect. 4 6
134 120.06 radiation 1.0 30 < th dose independent sin 9 NA
137 120.08 temperature 20.0 720 > th dose dependent rect. 5 3
144 120.17 humidity 90.0 270 > th dose dependent rect. 4 1
148 120.20 temperature 20.0 720 > th dose dependent rect. 6 1
151 120.24 wind 1.0 270 < th dose independent rect. 4 2
174 120.26 radiation 20.0 30 < th dose dependent sin 11 NA
190 120.53 wind 1.0 270 < th dose dependent rect. 4 2
195 120.60 temperature 10.0 10 > th dose dependent rect. 5 16
196 120.61 temperature 25.0 1440 > th dose independent rect. 24 5
197 120.62 temperature 25.0 270 < th dose independent rect. 22 9
199 120.63 humidity 70.0 10 > th dose dependent rect. 11 18
214 120.74 temperature 10.0 270 > th dose dependent rect. 4 14
226 120.82 wind 1.0 90 < th dose independent rect. 4 18
235 120.90 wind 1.0 90 < th dose independent rect. 4 13
243 120.94 humidity 70.0 720 > th dose dependent rect. 19 1
248 120.97 humidity 80.0 10 > th dose independent rect. 11 18
261 121.08 radiation 1.0 270 < th dose dependent rect. 5 23
268 121.12 radiation 1.0 30 > th dose independent rect. 7 23
283 121.20 radiation 1.0 270 > th dose independent rect. 12 21
284 121.20 radiation 1.0 30 < th dose dependent rect. 7 23
285 121.21 radiation 1.0 30 < th dose dependent no NA NA
287 121.21 radiation 1.0 30 < th dose dependent rect. 11 21
293 121.21 radiation 1.0 30 < th dose dependent rect. 13 23
294 121.21 radiation 1.0 30 < th dose dependent rect. 15 23
297 121.24 radiation 1.0 30 < th dose dependent rect. 17 23
306 121.27 humidity 50.0 10 > th dose dependent rect. 11 18
307 121.28 radiation 1.0 10 > th dose independent rect. 5 5
319 121.28 radiation 1.0 270 < th dose independent rect. 7 21
320 121.28 radiation 1.0 30 < th dose dependent rect. 13 19
328 121.30 wind 9.0 30 < th dose independent rect. 7 23
333 121.34 radiation 1.0 30 > th dose independent rect. 16 14
343 121.37 wind 1.0 90 < th dose dependent rect. 4 18
359 121.39 humidity 70.0 720 > th dose independent rect. 15 13
366 121.41 radiation 1.0 30 < th dose independent rect. 18 23
376 121.44 wind 1.0 90 < th dose dependent rect. 4 11
398 121.46 humidity 50.0 720 > th dose dependent rect. 17 3
400 121.46 radiation 1.0 30 < th dose dependent rect. 15 21
406 121.49 wind 1.0 90 < th dose dependent rect. 4 13
413 121.51 radiation 1.0 30 < th dose dependent rect. 13 17
416 121.52 temperature 30.0 10 < th dose independent rect. 5 6
425 121.53 radiation 1.0 30 < th dose dependent rect. 15 17
437 121.56 temperature 20.0 10 > th dose independent rect. 21 8
438 121.56 wind 1.0 90 > th dose independent rect. 1 13
480 121.64 humidity 70.0 720 > th dose independent rect. 15 5
485 121.65 radiation 1.0 270 < th dose independent rect. 15 13
510 121.76 radiation 1.0 30 < th dose dependent rect. 15 15
514 121.77 temperature 25.0 1440 > th dose dependent rect. 24 1
515 121.78 atmosphere 1015.0 10 < th dose independent rect. 10 19
518 121.80 humidity 50.0 10 > th dose dependent rect. 18 11
520 121.81 radiation 1.0 270 < th dose dependent rect. 15 13
552 121.92 temperature 30.0 30 < th dose dependent rect. 6 1
556 121.93 temperature 20.0 90 > th dose independent rect. 18 10
559 121.95 precipitation 0.1 270 < th dose independent rect. 12 21
561 121.95 precipitation 0.1 270 < th dose dependent rect. 12 21
564 121.96 temperature 20.0 10 > th dose independent rect. 10 19
574 121.99 humidity 80.0 10 > th dose independent rect. 8 21
578 122.00 temperature 20.0 90 > th dose independent rect. 10 18
591 122.04 radiation 1.0 270 > th dose independent rect. 5 1
592 122.04 radiation 1.0 30 < th dose independent rect. 18 20
604 122.07 humidity 70.0 720 > th dose independent rect. 17 11
606 122.07 humidity 80.0 720 > th dose independent rect. 24 21
613 122.08 humidity 80.0 720 > th dose independent rect. 8 20
635 122.12 temperature 15.0 10 > th dose dependent rect. 21 8
640 122.13 humidity 80.0 720 > th dose independent rect. 10 18
641 122.13 wind 1.0 90 > th dose independent rect. 9 22
642 122.13 humidity 80.0 30 < th dose independent rect. 12 23
652 122.14 humidity 80.0 720 < th dose independent rect. 19 2
664 122.17 humidity 80.0 720 < th dose independent rect. 12 10
667 122.18 precipitation 0.1 10 < th dose independent rect. 5 5
669 122.18 precipitation 0.1 10 < th dose dependent rect. 5 5
714 122.22 precipitation 0.1 270 < th dose independent rect. 4 13
717 122.22 precipitation 0.1 270 < th dose dependent rect. 4 13
730 122.24 temperature 20.0 10 > th dose independent rect. 5 5
735 122.24 temperature 10.0 10 > th dose dependent rect. 5 5
739 122.25 wind 9.0 10 < th dose independent rect. 5 5
740 122.25 temperature 10.0 10 > th dose independent rect. 5 5
742 122.25 humidity 50.0 10 > th dose independent rect. 5 5
743 122.25 atmosphere 995.0 10 > th dose independent rect. 5 5
744 122.25 atmosphere 1015.0 10 < th dose independent rect. 5 5
745 122.25 radiation 1.0 30 < th dose independent rect. 18 18
746 122.25 temperature 10.0 10 > th dose independent rect. 10 19
766 122.26 temperature 20.0 720 > th dose dependent sin 6 NA
782 122.28 wind 9.0 10 < th dose independent rect. 11 18
785 122.28 radiation 1.0 10 > th dose dependent rect. 18 12
791 122.29 radiation 40.0 10 < th dose independent rect. 5 6
806 122.31 radiation 1.0 30 < th dose independent rect. 18 14
811 122.31 radiation 1.0 30 < th dose independent rect. 7 23
825 122.32 radiation 1.0 30 < th dose independent no NA NA
830 122.32 radiation 1.0 30 < th dose independent rect. 11 21
836 122.32 radiation 1.0 30 < th dose independent rect. 13 23
837 122.32 radiation 1.0 30 < th dose independent rect. 15 23
848 122.33 radiation 1.0 30 > th dose independent no NA NA
849 122.33 temperature 25.0 1440 < th dose independent rect. 4 1
852 122.33 radiation 1.0 30 > th dose independent rect. 5 14
913 122.34 wind 5.0 10 < th dose independent rect. 5 5
915 122.34 humidity 80.0 720 > th dose independent rect. 10 11
921 122.35 radiation 20.0 270 < th dose dependent rect. 17 11
926 122.36 atmosphere 1015.0 270 < th dose independent rect. 23 13
932 122.37 wind 3.0 43200 < th dose independent rect. 11 2
954 122.39 radiation 1.0 30 < th dose independent rect. 13 19
993 122.40 radiation 1.0 30 < th dose dependent rect. 21 23