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Os03g0839900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UspA domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0204) R2 : 0.016
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.117 (0.0429) R2dN8 : 0.0206 R2N8 : 0.016
σ : 0.384
deviance : 67.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.46 0.31 12.3 0.392 0.153 -0.576 -0.00609 0.892 0.0341 12.6 25.5 10 -- --
44.42 0.313 12.3 0.538 0.136 -0.644 -0.308 -- 0.0633 12.7 25.5 10 -- --
43.4 0.309 12.3 0.392 0.151 -0.578 -- 0.89 0.0343 12.6 25.5 10 -- --
44.82 0.314 12.3 0.527 0.137 -0.644 -- -- 0.0616 12.5 25.5 10 -- --
44.6 0.313 12.3 0.373 -- -0.695 -- 0.82 0.0111 -- 25.5 10 -- --
50.7 0.334 12.3 0.687 0.277 -- -0.302 -- 0.198 13 -- -- -- --
51.08 0.335 12.3 0.676 0.277 -- -- -- 0.196 13 -- -- -- --
45.81 0.317 12.3 0.499 -- -0.745 -- -- 0.0387 -- 25.5 10 -- --
51.41 0.334 12.3 -- 0.111 -0.855 -- -- -0.0127 12.3 24.59 12 -- --
55.87 0.349 12.3 0.666 -- -- -- -- 0.191 -- -- -- -- --
63.14 0.372 12.3 -- 0.266 -- -- -- 0.121 12.9 -- -- -- --
51.94 0.337 12.3 -- -- -0.897 -- -- -0.0438 -- 25.5 10 -- --
67.57 0.384 12.3 -- -- -- -- -- 0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.45 temperature 25 10 < th dose dependent rect. 13 23
2 43.49 temperature 20 10 > th dose dependent sin 10 NA
4 43.50 temperature 25 10 < th dose dependent rect. 1 23
5 43.51 temperature 25 10 < th dose dependent rect. 23 23
7 43.52 temperature 25 10 < th dose dependent rect. 11 23
9 43.54 temperature 25 10 < th dose dependent no NA NA
10 43.54 temperature 25 10 < th dose dependent rect. 21 23
11 43.55 temperature 25 10 < th dose dependent rect. 9 23
12 43.55 temperature 25 10 < th dose dependent rect. 17 23
13 43.56 temperature 25 10 < th dose dependent rect. 19 23
14 43.57 humidity 50 14400 < th dose independent rect. 17 18
15 43.59 temperature 25 10 < th dose dependent rect. 7 23
24 43.66 temperature 25 10 < th dose dependent rect. 3 23
26 43.70 temperature 25 10 < th dose dependent rect. 5 23
50 43.86 temperature 30 10 < th dose dependent sin 9 NA
67 43.96 temperature 25 10 < th dose dependent sin 7 NA
68 43.96 temperature 20 720 > th dose dependent rect. 19 4
81 44.02 humidity 50 14400 < th dose independent rect. 16 20
91 44.04 temperature 20 10 > th dose dependent rect. 20 13
92 44.06 humidity 50 14400 > th dose independent rect. 16 19
94 44.07 humidity 50 14400 > th dose independent rect. 17 17
105 44.13 temperature 20 90 > th dose dependent rect. 20 13
129 44.19 humidity 60 14400 < th dose dependent rect. 17 17
165 44.32 temperature 20 90 > th dose independent rect. 4 23
182 44.39 humidity 60 14400 < th dose independent rect. 17 16
189 44.42 temperature 20 270 > th dose dependent rect. 17 14
222 44.52 humidity 50 90 > th dose dependent rect. 9 8
233 44.55 temperature 30 90 < th dose dependent rect. 15 14
265 44.64 temperature 30 10 < th dose dependent rect. 14 16
268 44.66 humidity 50 14400 > th dose independent sin 11 NA
272 44.67 temperature 25 10 < th dose dependent rect. 14 18
277 44.69 humidity 50 14400 < th dose independent sin 11 NA
288 44.73 wind 1 1440 > th dose independent rect. 4 13
296 44.73 temperature 15 10 > th dose dependent rect. 5 22
297 44.74 wind 1 1440 < th dose independent rect. 4 13
313 44.75 temperature 25 10 < th dose dependent rect. 22 14
332 44.79 wind 5 14400 < th dose independent rect. 5 1
333 44.79 temperature 20 30 > th dose independent rect. 13 23
336 44.79 wind 1 1440 < th dose dependent rect. 4 15
340 44.80 wind 1 1440 < th dose dependent rect. 4 13
366 44.84 humidity 80 43200 < th dose independent rect. 5 1
400 44.89 temperature 20 10 < th dose independent rect. 22 21
407 44.90 temperature 20 10 < th dose independent rect. 11 22
415 44.91 temperature 20 720 > th dose dependent rect. 13 11
427 44.93 temperature 20 10 > th dose independent rect. 11 23
438 44.94 temperature 20 720 > th dose dependent rect. 11 13
445 44.95 temperature 25 720 > th dose independent rect. 19 3
454 44.96 temperature 25 720 > th dose independent rect. 13 10
469 44.97 humidity 50 90 > th dose dependent rect. 9 10
474 44.98 wind 1 4320 > th dose independent rect. 4 5
482 44.99 temperature 20 90 < th dose independent rect. 23 20
489 45.00 wind 1 1440 < th dose independent rect. 4 10
490 45.00 temperature 20 10 < th dose independent rect. 11 19
493 45.00 humidity 80 43200 < th dose dependent rect. 5 1
515 45.02 temperature 10 720 > th dose dependent rect. 11 12
523 45.03 wind 5 14400 > th dose independent rect. 5 1
538 45.05 wind 1 1440 > th dose independent rect. 4 10
548 45.06 temperature 20 10 < th dose independent rect. 20 23
600 45.10 wind 1 1440 < th dose dependent rect. 4 9
619 45.12 temperature 20 30 > th dose independent no NA NA
631 45.13 temperature 20 10 < th dose independent rect. 15 23
637 45.13 temperature 15 10 > th dose dependent rect. 13 23
640 45.14 temperature 20 10 < th dose independent rect. 7 23
641 45.14 temperature 20 10 < th dose independent rect. 17 23
643 45.14 temperature 10 720 > th dose dependent rect. 13 10
662 45.16 temperature 20 10 < th dose independent no NA NA
665 45.16 temperature 20 10 < th dose independent rect. 1 23
667 45.16 wind 5 14400 > th dose dependent rect. 5 2
676 45.17 humidity 50 1440 > th dose dependent rect. 11 1
683 45.18 temperature 25 720 < th dose independent rect. 15 8
695 45.19 temperature 20 90 > th dose independent rect. 15 23
716 45.20 temperature 30 720 < th dose dependent rect. 18 1
732 45.22 humidity 60 14400 > th dose independent rect. 17 3
757 45.23 temperature 20 10 < th dose independent rect. 3 23
769 45.24 humidity 60 14400 < th dose independent rect. 17 3
772 45.24 temperature 20 30 < th dose independent rect. 5 23
774 45.24 humidity 90 1440 < th dose dependent rect. 11 1
790 45.25 humidity 60 14400 > th dose independent rect. 17 12
806 45.26 humidity 60 14400 > th dose independent rect. 17 8
807 45.26 humidity 60 14400 > th dose independent rect. 17 10
830 45.27 temperature 20 10 > th dose independent rect. 15 23
857 45.30 wind 1 43200 < th dose dependent rect. 4 21
892 45.33 temperature 15 10 > th dose dependent rect. 11 23
896 45.34 temperature 20 720 > th dose dependent sin 17 NA
915 45.36 wind 1 43200 > th dose independent rect. 8 1
922 45.36 temperature 30 270 < th dose dependent rect. 21 7
930 45.37 temperature 30 720 < th dose dependent rect. 17 4
931 45.37 temperature 30 270 < th dose dependent rect. 19 9
937 45.38 wind 1 4320 < th dose independent rect. 4 5
941 45.38 radiation 1 43200 < th dose dependent rect. 21 3
978 45.41 temperature 20 90 > th dose independent rect. 19 23
990 45.42 humidity 60 14400 < th dose dependent sin 11 NA