Os03g0839600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os03g0839600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.43 | 0.582 | 7.55 | -0.755 | 3.52 | 2.82 | -0.51 | -0.219 | -0.793 | 19.8 | 21.61 | 269 | 23.8 | -- |
| 153.46 | 0.577 | 7.55 | -0.726 | 3.52 | 2.82 | -0.471 | -- | -0.783 | 19.9 | 21.6 | 268 | 23.8 | -- |
| 154.12 | 0.578 | 7.55 | -0.705 | 3.53 | 2.82 | -- | 0.0795 | -0.785 | 19.9 | 21.56 | 269 | 23.8 | -- |
| 154.12 | 0.578 | 7.55 | -0.715 | 3.53 | 2.83 | -- | -- | -0.787 | 19.9 | 21.57 | 267 | 23.8 | -- |
| 244.44 | 0.728 | 7.37 | -0.495 | -- | 3.97 | -- | 2.67 | -0.571 | -- | -21.63 | 1133 | 21.2 | -- |
| 261.17 | 0.758 | 7.42 | -0.263 | 2.88 | -- | -0.832 | -- | -0.35 | 18.8 | -- | -- | -- | -- |
| 262.94 | 0.759 | 7.42 | -0.248 | 2.87 | -- | -- | -- | -0.352 | 18.8 | -- | -- | -- | -- |
| 227.93 | 0.703 | 7.39 | -0.669 | -- | 3.76 | -- | -- | -0.583 | -- | -29.87 | 1107 | 20.8 | -- |
| 166.86 | 0.602 | 7.53 | -- | 3.47 | 2.6 | -- | -- | -0.686 | 19.7 | 21.72 | 266 | 23.9 | -- |
| 695.09 | 1.23 | 7.36 | -0.311 | -- | -- | -- | -- | -0.407 | -- | -- | -- | -- | -- |
| 264.57 | 0.761 | 7.42 | -- | 2.88 | -- | -- | -- | -0.324 | 18.8 | -- | -- | -- | -- |
| 239.03 | 0.72 | 7.38 | -- | -- | 3.61 | -- | -- | -0.48 | -- | -41.03 | 1100 | 20.6 | -- |
| 697.64 | 1.23 | 7.36 | -- | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.46 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 6 | 163.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 14 | 166.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 17 | 166.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 20 | 167.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 29 | 168.46 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 61 | 171.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 94 | 174.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 111 | 176.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 145 | 178.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 172 | 180.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 187 | 180.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 192 | 180.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 194 | 180.96 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 11 |
| 196 | 180.98 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 205 | 181.33 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 211 | 181.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 230 | 181.90 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 252 | 182.47 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 336 | 184.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 354 | 185.29 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 14 |
| 375 | 185.82 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 418 | 186.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 502 | 187.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 542 | 188.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 792 | 191.05 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 793 | 191.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 810 | 191.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 930 | 192.12 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |