Os03g0839300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0839300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.06 | 0.226 | 11.1 | 0.119 | 0.482 | 1.3 | -0.0938 | 0.629 | -0.0894 | 1.76 | 20.8 | 295 | -- | -- |
| 23.3 | 0.225 | 11.2 | -0.00563 | 0.464 | 1.34 | -0.19 | -- | -0.123 | 1.94 | 20.97 | 323 | -- | -- |
| 23.09 | 0.224 | 11.1 | 0.135 | 0.482 | 1.3 | -- | 0.712 | -0.0863 | 1.76 | 20.73 | 294 | -- | -- |
| 23.45 | 0.226 | 11.2 | -0.00137 | 0.476 | 1.35 | -- | -- | -0.126 | 1.96 | 20.93 | 314 | -- | -- |
| 26.04 | 0.238 | 11.1 | 0.117 | -- | 1.38 | -- | 0.953 | -0.0745 | -- | 16.9 | 717 | -- | -- |
| 56.14 | 0.351 | 11.1 | 0.303 | 0.413 | -- | -0.0109 | -- | 0.108 | 21 | -- | -- | -- | -- |
| 56.14 | 0.351 | 11.1 | 0.303 | 0.413 | -- | -- | -- | 0.108 | 21 | -- | -- | -- | -- |
| 26.73 | 0.241 | 11.2 | -0.042 | -- | 1.27 | -- | -- | -0.13 | -- | 19.97 | 733 | -- | -- |
| 23.45 | 0.226 | 11.2 | -- | 0.476 | 1.35 | -- | -- | -0.126 | 1.96 | 20.94 | 314 | -- | -- |
| 65.93 | 0.379 | 11.1 | 0.304 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 58.56 | 0.358 | 11.1 | -- | 0.413 | -- | -- | -- | 0.074 | 21 | -- | -- | -- | -- |
| 26.74 | 0.241 | 11.2 | -- | -- | 1.24 | -- | -- | -0.115 | -- | 19.86 | 727 | -- | -- |
| 68.36 | 0.386 | 11.1 | -- | -- | -- | -- | -- | 0.0715 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 9 | 23.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 13 | 23.31 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 21 | 23.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 28 | 23.69 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 31 | 23.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 36 | 23.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 76 | 24.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 113 | 24.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 172 | 24.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 221 | 25.06 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 279 | 25.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 283 | 25.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 325 | 25.57 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 402 | 25.68 | temperature | 30 | 1440 | < th | dose dependent | sin | 6 | NA |
| 416 | 25.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 487 | 25.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 656 | 25.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 733 | 26.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 774 | 26.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 21 |
| 798 | 26.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 863 | 26.14 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 883 | 26.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 900 | 26.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 943 | 26.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 967 | 26.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 988 | 26.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 989 | 26.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 23 |