Os03g0839200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os03g0839200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.53 | 0.659 | 10.3 | 2.99 | 0.902 | -2.15 | 0.168 | 4.17 | 0.484 | 2.5 | 26.1 | 1347 | -- | -- |
| 202.45 | 0.663 | 10.4 | 1.91 | 0.978 | -1.91 | 0.0764 | -- | 0.344 | 2.07 | 25.27 | 1246 | -- | -- |
| 196.61 | 0.653 | 10.3 | 3.01 | 0.9 | -2.16 | -- | 4.3 | 0.483 | 2.45 | 26.15 | 1346 | -- | -- |
| 201.65 | 0.661 | 10.4 | 1.89 | 0.931 | -1.73 | -- | -- | 0.253 | 2.44 | 25.98 | 1319 | -- | -- |
| 224.6 | 0.698 | 10.3 | 3.01 | -- | -2.4 | -- | 4.79 | 0.479 | -- | 26.35 | 1664 | -- | -- |
| 329.68 | 0.851 | 10.5 | 1.31 | 0.676 | -- | -0.0896 | -- | 0.139 | 2.61 | -- | -- | -- | -- |
| 329.7 | 0.85 | 10.5 | 1.31 | 0.676 | -- | -- | -- | 0.139 | 2.66 | -- | -- | -- | -- |
| 230.8 | 0.708 | 10.4 | 1.92 | -- | -1.91 | -- | -- | 0.257 | -- | 26.18 | 1687 | -- | -- |
| 287.7 | 0.79 | 10.5 | -- | 0.926 | -1.36 | -- | -- | -0.121 | 2.4 | 27.75 | 1282 | -- | -- |
| 356.41 | 0.882 | 10.5 | 1.34 | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
| 375.22 | 0.906 | 10.5 | -- | 0.702 | -- | -- | -- | -0.0073 | 2.68 | -- | -- | -- | -- |
| 320.06 | 0.833 | 10.5 | -- | -- | -1.55 | -- | -- | -0.0477 | -- | 27.27 | 1718 | -- | -- |
| 403.98 | 0.938 | 10.5 | -- | -- | -- | -- | -- | 0.00715 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 197.39 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 2 | 197.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 4 | 197.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 18 | 198.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 29 | 198.24 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 110 | 199.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 112 | 199.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 113 | 199.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 130 | 199.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 139 | 199.69 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 158 | 199.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 170 | 200.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 298 | 202.93 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 317 | 203.90 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 342 | 204.57 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 343 | 204.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 345 | 204.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 361 | 205.28 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 363 | 205.48 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 369 | 205.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 372 | 205.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 391 | 205.91 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 407 | 206.76 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 414 | 206.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 418 | 206.87 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 433 | 207.22 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 437 | 207.28 | temperature | 30 | 1440 | < th | dose independent | sin | 2 | NA |
| 453 | 207.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 456 | 207.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 468 | 207.57 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 511 | 207.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 512 | 207.67 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 529 | 207.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 607 | 208.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 610 | 208.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 666 | 208.95 | temperature | 30 | 1440 | > th | dose independent | sin | 2 | NA |
| 712 | 209.21 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 813 | 209.53 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 814 | 209.55 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 822 | 209.65 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 829 | 209.70 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 832 | 209.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 833 | 209.78 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 931 | 210.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 938 | 210.42 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 962 | 210.67 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 977 | 210.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 980 | 210.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 988 | 210.83 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 996 | 210.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |