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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0837700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein DnaJ, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0493) R2 : 0.603
β1 : 2.48 (0.179) R2dD : 0.175 R2D : 0.188
β2 : 2.13 (0.123) R2dC : 0.265 R2C : 0.244
β3 : 11.8 (1.51) R2dE : 0.29 R2E : -0.278
β4 : 5.13 (0.526) R2dD*C : 0.085 R2D*C : 0.104
β5 : -39.7 (5.05) R2dD*E : 0.294 R2D*E : -0.18
γ1 : -0.023 (0.104) R2dN8 : 5e-05 R2N8 : -0.00398
σ : 0.916
deviance : 379.84
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_____
C
peak time of C : 15.5
E
wheather : precipitation
threshold : 0.2727
memory length : 233
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 1.25
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
379.84 0.916 4.01 2.48 2.13 11.8 5.13 -39.7 -0.023 15.5 0.2727 233 1.25 --
425.87 0.969 3.94 2.53 2.1 2.65 5.43 -- -0.104 15.5 0.2727 233 1.25 --
457.63 0.996 4.01 2.49 2.16 11.7 -- -40.2 -0.0308 15.6 0.262 233 2.86 --
517.47 1.07 3.92 2.63 2.13 2.1 -- -- -0.0738 15.5 0.2727 233 1.25 --
710.92 1.24 4.02 2.49 -- 10.5 -- -41.9 -0.0814 -- 0.4999 233 1.97 --
433.65 0.976 3.94 2.56 2.07 -- 5.33 -- -0.112 15.5 -- -- -- --
522.4 1.07 3.93 2.65 2.11 -- -- -- -0.0811 15.5 -- -- -- --
769.04 1.3 3.92 2.56 -- 0.944 -- -- -0.134 -- 0.2727 233 1.25 --
673.45 1.21 4.01 -- 2.03 1.75 -- -- -0.251 15.3 0.366 1507 1.79 --
770.04 1.3 3.92 2.57 -- -- -- -- -0.137 -- -- -- -- --
708.08 1.24 3.99 -- 2.05 -- -- -- -0.377 15.5 -- -- -- --
709.22 1.24 3.93 -- -- 2.05 -- -- -0.366 -- -0.7415 2637 0.527 --
943.68 1.43 3.99 -- -- -- -- -- -0.422 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 376.07 wind 3.0 270 > th dose dependent rect. 4 2
2 378.16 wind 3.0 90 > th dose dependent rect. 4 4
4 379.30 precipitation 0.1 90 > th dose independent rect. 5 3
7 379.30 precipitation 0.1 90 > th dose dependent rect. 5 3
10 379.42 wind 7.0 270 > th dose dependent rect. 3 5
11 379.56 precipitation 0.1 90 > th dose independent rect. 4 7
14 379.76 wind 5.0 90 > th dose independent rect. 4 4
15 380.05 precipitation 0.1 90 > th dose dependent rect. 4 7
24 381.60 wind 3.0 90 > th dose independent rect. 5 2
26 382.62 precipitation 0.1 270 > th dose independent rect. 4 1
29 382.78 precipitation 0.1 270 > th dose dependent rect. 4 1
49 384.82 precipitation 0.1 270 > th dose independent sin 7 NA
52 385.11 precipitation 0.1 270 > th dose dependent sin 7 NA
64 386.31 precipitation 0.1 270 > th dose independent rect. 23 11
65 386.32 precipitation 0.1 270 > th dose dependent rect. 23 11
162 390.63 wind 5.0 10 > th dose independent rect. 4 4
220 392.35 wind 9.0 270 < th dose dependent rect. 10 17
245 392.96 precipitation 0.1 10 > th dose independent rect. 5 3
261 392.96 precipitation 0.1 10 > th dose dependent rect. 5 3
292 393.70 temperature 20.0 270 > th dose independent rect. 8 8
344 394.43 wind 3.0 10 > th dose dependent rect. 6 1
361 394.71 wind 3.0 10 > th dose independent rect. 6 1
418 395.24 temperature 20.0 270 > th dose independent rect. 9 6
439 395.70 wind 1.0 270 > th dose independent rect. 14 8
469 396.27 wind 5.0 270 < th dose independent rect. 21 6
473 396.34 wind 5.0 270 < th dose independent rect. 3 7
482 396.41 wind 7.0 270 < th dose independent rect. 9 18
511 396.82 humidity 60.0 270 > th dose independent rect. 3 7
521 396.93 temperature 15.0 270 > th dose independent rect. 22 16
569 397.93 temperature 15.0 270 > th dose independent rect. 9 18
601 398.41 wind 7.0 270 < th dose independent rect. 22 16
628 399.05 wind 9.0 270 < th dose dependent rect. 21 6
633 399.13 precipitation 0.1 270 > th dose independent rect. 3 18
647 399.47 precipitation 0.1 270 < th dose independent rect. 21 6
648 399.47 precipitation 0.1 270 < th dose dependent rect. 21 6
651 399.49 temperature 15.0 270 > th dose independent rect. 14 8
655 399.55 precipitation 0.1 270 < th dose independent rect. 3 6
656 399.55 precipitation 0.1 270 < th dose dependent rect. 3 6
658 399.56 temperature 10.0 270 > th dose independent rect. 3 6
661 399.56 atmosphere 995.0 270 > th dose independent rect. 3 6
662 399.56 atmosphere 1015.0 270 < th dose independent rect. 3 6
674 399.67 atmosphere 995.0 270 > th dose independent rect. 22 16
681 399.78 precipitation 0.1 270 < th dose independent rect. 22 16
682 399.78 precipitation 0.1 270 < th dose dependent rect. 22 16
700 400.02 precipitation 0.1 270 < th dose independent rect. 9 18
701 400.02 precipitation 0.1 270 < th dose dependent rect. 9 18
706 400.13 radiation 40.0 270 < th dose independent rect. 3 6
724 400.32 atmosphere 995.0 270 > th dose independent rect. 9 18
725 400.34 wind 9.0 270 < th dose independent rect. 14 8
733 400.47 wind 9.0 270 < th dose dependent rect. 3 6
742 400.62 humidity 80.0 270 > th dose independent rect. 21 6
744 400.69 precipitation 0.1 270 < th dose independent sin 11 NA
746 400.69 precipitation 0.1 270 < th dose dependent sin 11 NA
765 400.93 radiation 1.0 270 < th dose dependent rect. 21 6
767 400.94 temperature 10.0 270 > th dose independent rect. 21 6
768 400.94 temperature 30.0 270 < th dose independent rect. 21 6
769 400.94 humidity 50.0 270 > th dose independent rect. 21 6
772 400.94 atmosphere 995.0 270 > th dose independent rect. 21 6
773 400.94 radiation 1.0 270 < th dose independent rect. 21 6
778 400.94 temperature 10.0 270 > th dose independent rect. 3 18
785 400.98 temperature 30.0 270 < th dose independent rect. 3 6
795 401.09 temperature 20.0 270 > th dose independent rect. 10 3
801 401.15 wind 9.0 270 < th dose dependent rect. 9 6
804 401.18 wind 7.0 270 < th dose independent rect. 9 6
817 401.36 wind 7.0 270 < th dose independent rect. 8 8
851 401.63 atmosphere 1015.0 270 < th dose independent rect. 3 18
856 401.66 atmosphere 1010.0 270 < th dose independent rect. 14 8
861 401.73 radiation 1.0 270 > th dose independent rect. 8 8
864 401.76 radiation 1.0 270 > th dose independent rect. 9 6
871 401.82 wind 9.0 90 < th dose dependent rect. 11 6
875 401.88 precipitation 0.1 270 < th dose independent rect. 3 18
876 401.88 precipitation 0.1 270 < th dose dependent rect. 3 18
902 401.95 precipitation 0.1 270 < th dose independent rect. 14 8
904 401.95 precipitation 0.1 270 < th dose dependent rect. 14 8
906 401.97 wind 9.0 270 < th dose independent rect. 3 18
918 402.08 temperature 20.0 270 > th dose independent rect. 11 1
936 402.32 radiation 1.0 10 < th dose independent rect. 6 1
975 402.71 temperature 30.0 270 < th dose independent rect. 10 17
986 402.87 temperature 30.0 90 < th dose independent rect. 11 6