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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0832800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phospholipid/glycerol acyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.54 (0.0558) R2 : 0.515
β1 : -3.28 (0.21) R2dD : 0.278 R2D : 0.13
β2 : 1.17 (0.16) R2dC : 0.0674 R2C : 0.145
β3 : 2.66 (0.272) R2dE : 0.142 R2E : 0.089
β4 : -4.74 (0.633) R2dD*C : 0.067 R2D*C : 0.0164
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.805 (0.125) R2dN8 : 0.0686 R2N8 : -0.0277
σ : 1.03
deviance : 493.66
__
_____
C
peak time of C : 19.4
E
wheather : temperature
threshold : 15.97
memory length : 368
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.2
open length of G : 20.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
481.13 1.03 5.67 -4.26 1.09 2.76 -3.48 -6.69 -1.12 19.7 19.9 316 12.8 20.1
493.66 1.03 5.54 -3.28 1.17 2.66 -4.74 -- -0.805 19.4 15.97 368 12.2 20.7
501 1.04 5.76 -4.72 0.981 3.17 -- -9.66 -1.32 21 20.66 383 11.6 21
558.87 1.1 5.56 -3.07 1.2 2.42 -- -- -0.802 19.9 15.65 359 12.1 20.9
541.88 1.08 5.75 -4.73 -- 3.62 -- -10.1 -1.28 -- 20.79 367 11.9 20.4
591.02 1.14 5.49 -2.72 1.88 -- -3.94 -- -0.451 20 -- -- -- --
635.22 1.18 5.5 -2.62 1.88 -- -- -- -0.459 20.4 -- -- -- --
593.17 1.13 5.5 -3.42 -- 3.16 -- -- -1.03 -- 16.41 426 10.3 18.2
786.36 1.31 5.44 -- 1.44 1.42 -- -- -0.302 20.5 20.97 263 13.4 19.3
831.31 1.35 5.45 -2.63 -- -- -- -- -0.479 -- -- -- -- --
816.61 1.34 5.43 -- 1.89 -- -- -- -0.167 20.3 -- -- -- --
839.01 1.35 5.46 -- -- 2.47 -- -- -0.455 -- 12.51 361 10.7 17.7
1014.31 1.49 5.38 -- -- -- -- -- -0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 484.03 temperature 20 270 > th dose dependent rect. 13 20
15 493.30 wind 9 43200 > th dose dependent rect. 19 3
20 494.82 wind 7 43200 > th dose dependent rect. 8 19
21 494.88 wind 7 43200 > th dose dependent rect. 10 23
27 495.00 wind 9 43200 < th dose independent rect. 13 20
29 495.07 wind 7 43200 > th dose dependent rect. 4 21
30 495.07 wind 7 43200 > th dose dependent rect. 4 23
31 495.07 wind 7 43200 > th dose dependent rect. 16 23
55 495.25 wind 7 43200 > th dose dependent rect. 24 23
57 495.31 wind 7 43200 > th dose dependent rect. 2 23
58 495.33 wind 9 43200 > th dose dependent sin 16 NA
59 495.33 wind 7 43200 > th dose dependent no NA NA
72 495.49 wind 7 43200 > th dose dependent rect. 12 21
79 495.57 wind 7 43200 > th dose dependent rect. 13 23
84 495.64 wind 7 43200 > th dose dependent rect. 19 23
94 495.90 wind 9 43200 < th dose independent rect. 17 22
96 495.93 wind 9 43200 > th dose independent rect. 13 20
129 496.49 wind 9 43200 < th dose independent rect. 7 18
131 496.51 wind 9 43200 < th dose independent rect. 5 18
134 496.56 wind 9 43200 < th dose independent rect. 7 20
139 496.60 wind 9 43200 < th dose independent rect. 7 16
144 496.66 wind 7 43200 > th dose independent rect. 15 21
145 496.66 wind 9 43200 < th dose independent rect. 24 23
147 496.67 wind 9 43200 > th dose dependent rect. 13 18
157 496.76 wind 9 43200 < th dose independent rect. 7 23
170 496.84 wind 9 43200 > th dose independent rect. 17 22
171 496.85 wind 9 43200 < th dose independent rect. 7 14
173 496.86 wind 9 43200 < th dose independent rect. 22 23
176 496.89 wind 9 43200 < th dose independent rect. 24 21
178 496.92 wind 9 43200 < th dose independent rect. 2 21
193 497.02 wind 7 43200 < th dose independent rect. 15 21
206 497.14 wind 9 43200 < th dose independent no NA NA
207 497.15 wind 9 43200 > th dose independent rect. 8 19
209 497.17 wind 9 43200 > th dose independent rect. 8 17
216 497.22 temperature 10 720 > th dose dependent rect. 6 21
236 497.40 wind 5 43200 > th dose dependent rect. 20 1
239 497.44 wind 9 43200 > th dose independent rect. 9 23
243 497.48 wind 9 43200 > th dose independent sin 14 NA
272 497.67 wind 7 43200 > th dose dependent sin 23 NA
287 497.82 wind 9 43200 < th dose independent rect. 19 3
293 497.86 wind 9 43200 > th dose independent rect. 5 18
295 497.87 wind 9 43200 < th dose independent sin 13 NA
300 497.88 temperature 10 720 > th dose dependent rect. 6 19
306 497.98 wind 9 43200 > th dose independent rect. 8 13
312 498.03 wind 9 43200 > th dose independent rect. 24 23
336 498.25 wind 9 43200 > th dose independent rect. 2 21
373 498.49 wind 9 43200 > th dose independent rect. 22 23
380 498.55 wind 9 43200 > th dose independent no NA NA
406 498.73 wind 9 43200 > th dose independent rect. 19 3
749 500.44 wind 9 43200 < th dose independent sin 23 NA
874 501.12 atmosphere 1005 270 > th dose dependent rect. 10 11
898 501.22 wind 7 43200 > th dose independent rect. 16 16
901 501.24 wind 9 43200 > th dose independent sin 23 NA
914 501.30 wind 7 43200 < th dose independent rect. 16 16
974 501.68 atmosphere 1000 270 > th dose dependent rect. 9 13
988 501.75 wind 7 43200 > th dose dependent rect. 18 7