Os03g0832400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2C-like protein.
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Os03g0832400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2C-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.28 | 0.33 | 9.64 | -1.01 | 1.5 | -0.478 | 0.812 | -0.669 | -0.313 | 6.17 | 81.02 | 785 | -- | -- |
| 50.17 | 0.33 | 9.64 | -1.04 | 1.5 | -0.485 | 0.629 | -- | -0.303 | 6.15 | 81.01 | 809 | -- | -- |
| 49.84 | 0.329 | 9.64 | -0.976 | 1.48 | -0.475 | -- | -0.446 | -0.332 | 6.16 | 83 | 832 | -- | -- |
| 50.1 | 0.33 | 9.65 | -1.03 | 1.47 | -0.505 | -- | -- | -0.332 | 6.23 | 83.62 | 817 | -- | -- |
| 98.36 | 0.462 | 9.66 | -0.954 | -- | 0.889 | -- | -0.0561 | -0.227 | -- | 74.16 | 410 | -- | -- |
| 54.95 | 0.348 | 9.65 | -1.05 | 1.3 | -- | 0.543 | -- | -0.301 | 5.68 | -- | -- | -- | -- |
| 55.67 | 0.349 | 9.65 | -1.04 | 1.3 | -- | -- | -- | -0.304 | 5.68 | -- | -- | -- | -- |
| 98.37 | 0.462 | 9.66 | -0.958 | -- | 0.888 | -- | -- | -0.228 | -- | 74.24 | 410 | -- | -- |
| 77.32 | 0.41 | 9.63 | -- | 1.57 | -0.513 | -- | -- | -0.226 | 6.16 | 84.16 | 653 | -- | -- |
| 143.87 | 0.56 | 9.67 | -1 | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
| 84.38 | 0.43 | 9.62 | -- | 1.29 | -- | -- | -- | -0.187 | 5.72 | -- | -- | -- | -- |
| 122.18 | 0.515 | 9.64 | -- | -- | 0.942 | -- | -- | -0.126 | -- | 73.47 | 410 | -- | -- |
| 170.36 | 0.609 | 9.64 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.06 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 2 | 46.79 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 4 |
| 5 | 47.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 9 | 47.91 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 13 | 48.01 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 14 | 48.03 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 16 | 48.04 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 17 | 48.05 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 20 | 48.12 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 8 |
| 21 | 48.12 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 10 |
| 24 | 48.16 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 25 | 48.19 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 13 |
| 31 | 48.28 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 33 | 48.30 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 39 | 48.42 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 42 | 48.45 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 56 | 48.55 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 57 | 48.56 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 9 |
| 59 | 48.56 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 64 | 48.58 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 7 |
| 72 | 48.60 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 75 | 48.61 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 88 | 48.64 | humidity | 80.0 | 720 | > th | dose independent | rect. | 6 | 18 |
| 93 | 48.66 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 11 |
| 95 | 48.66 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 3 |
| 102 | 48.68 | humidity | 90.0 | 720 | < th | dose independent | rect. | 18 | 3 |
| 113 | 48.70 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 19 |
| 119 | 48.73 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 124 | 48.74 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 134 | 48.76 | humidity | 90.0 | 720 | < th | dose independent | rect. | 18 | 5 |
| 138 | 48.77 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 24 | 23 |
| 140 | 48.77 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 142 | 48.77 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 177 | 48.84 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 196 | 48.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 203 | 48.89 | humidity | 80.0 | 720 | < th | dose independent | rect. | 9 | 13 |
| 217 | 48.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 219 | 48.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 226 | 48.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 227 | 48.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 230 | 48.94 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 232 | 48.94 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 21 |
| 234 | 48.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 251 | 48.96 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 265 | 48.97 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 15 |
| 274 | 48.99 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 13 |
| 293 | 49.01 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 301 | 49.02 | temperature | 20.0 | 720 | > th | dose independent | sin | 6 | NA |
| 319 | 49.05 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 320 | 49.05 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 16 |
| 327 | 49.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 329 | 49.06 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 335 | 49.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 337 | 49.06 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 348 | 49.07 | temperature | 25.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 364 | 49.09 | temperature | 20.0 | 720 | < th | dose independent | sin | 6 | NA |
| 380 | 49.10 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 20 |
| 388 | 49.11 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 19 |
| 407 | 49.12 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 408 | 49.12 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 19 |
| 420 | 49.14 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 15 |
| 435 | 49.15 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 17 |
| 439 | 49.15 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 5 |
| 462 | 49.17 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 19 |
| 470 | 49.17 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 19 |
| 482 | 49.18 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 489 | 49.19 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 22 | 19 |
| 490 | 49.19 | humidity | 80.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 510 | 49.20 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 513 | 49.21 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 531 | 49.22 | humidity | 90.0 | 720 | < th | dose independent | rect. | 17 | 13 |
| 566 | 49.24 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 575 | 49.24 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 603 | 49.26 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 609 | 49.27 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 15 |
| 641 | 49.28 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 675 | 49.31 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 691 | 49.32 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 693 | 49.33 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 694 | 49.33 | humidity | 90.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 717 | 49.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 22 |
| 718 | 49.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 22 |
| 728 | 49.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 22 |
| 748 | 49.36 | humidity | 80.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 768 | 49.38 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 802 | 49.39 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 830 | 49.41 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 7 |
| 838 | 49.41 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 847 | 49.42 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 864 | 49.43 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 875 | 49.43 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 21 |
| 895 | 49.44 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 23 |
| 898 | 49.44 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 913 | 49.45 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 18 | 18 |
| 917 | 49.45 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 918 | 49.45 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 926 | 49.45 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 935 | 49.46 | humidity | 80.0 | 720 | < th | dose independent | rect. | 4 | 18 |
| 945 | 49.47 | humidity | 80.0 | 720 | < th | dose independent | sin | 19 | NA |
| 969 | 49.49 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 999 | 49.51 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 2 |
| 1000 | 49.51 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |