Os03g0831800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sec13p.
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Os03g0831800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sec13p.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.14 | 0.27 | 10.1 | 0.493 | 0.137 | 0.961 | 0.852 | 0.313 | 0.258 | 14.3 | 30.69 | 16 | -- | -- |
| 33.22 | 0.268 | 10.1 | 0.546 | 0.133 | 0.959 | 0.752 | -- | 0.272 | 14.3 | 30.74 | 16 | -- | -- |
| 34.9 | 0.277 | 10.1 | 0.611 | 0.089 | 0.873 | -- | -0.342 | 0.304 | 13.9 | 27.87 | 41 | -- | -- |
| 35.09 | 0.278 | 10.1 | 0.555 | 0.0977 | 0.886 | -- | -- | 0.289 | 14 | 28.01 | 16 | -- | -- |
| 35.2 | 0.276 | 10.1 | 0.622 | -- | 0.819 | -- | -0.378 | 0.3 | -- | 27.04 | 49 | -- | -- |
| 44.92 | 0.314 | 10.1 | 0.324 | 0.182 | -- | -0.605 | -- | 0.0969 | 1.94 | -- | -- | -- | -- |
| 46.33 | 0.319 | 10.1 | 0.343 | 0.182 | -- | -- | -- | 0.1 | 2.07 | -- | -- | -- | -- |
| 35.27 | 0.277 | 10.1 | 0.55 | -- | 0.847 | -- | -- | 0.286 | -- | 26.73 | 69 | -- | -- |
| 42.4 | 0.305 | 10.1 | -- | 0.0102 | 0.661 | -- | -- | 0.189 | 10.5 | 27.33 | 22 | -- | -- |
| 48.31 | 0.325 | 10.1 | 0.35 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 49.42 | 0.329 | 10.2 | -- | 0.188 | -- | -- | -- | 0.0622 | 2.11 | -- | -- | -- | -- |
| 42.41 | 0.304 | 10.1 | -- | -- | 0.655 | -- | -- | 0.188 | -- | 27.35 | 16 | -- | -- |
| 51.54 | 0.335 | 10.2 | -- | -- | -- | -- | -- | 0.0658 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.67 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 3 | 33.00 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 5 | 33.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 6 | 33.07 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 7 | 33.08 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 9 | 33.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 10 | 33.19 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 12 | 33.22 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 16 | 33.27 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 18 | 33.35 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 19 | 33.35 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 21 | 33.38 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 22 | 33.42 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 23 | 33.44 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 24 | 33.45 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 27 | 33.51 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 36 | 33.71 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 40 | 33.76 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 43 | 33.77 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 59 | 33.99 | temperature | 25.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 88 | 34.21 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 92 | 34.24 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 129 | 34.41 | temperature | 20.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 168 | 34.58 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 207 | 34.70 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 211 | 34.71 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 257 | 34.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 268 | 34.90 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 275 | 34.91 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 283 | 34.92 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 337 | 35.07 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 397 | 35.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 402 | 35.23 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 417 | 35.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 418 | 35.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 635 | 35.73 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 638 | 35.73 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 657 | 35.78 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 690 | 35.85 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 16 |
| 701 | 35.87 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 13 |
| 978 | 36.32 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 988 | 36.33 | temperature | 25.0 | 10 | < th | dose independent | rect. | 3 | 23 |