Os03g0831100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0831100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.1 | 0.56 | 8.86 | 0.113 | 1.27 | 1.75 | 0.295 | 0.153 | -0.293 | 16.4 | 9.919 | 10 | 8.95 | 20.1 |
| 142.12 | 0.555 | 8.87 | 0.101 | 1.27 | 1.75 | 0.362 | -- | -0.296 | 16.4 | 9.849 | 9 | 8.94 | 20.1 |
| 142.31 | 0.556 | 8.86 | 0.131 | 1.26 | 1.75 | -- | 0.406 | -0.29 | 16.3 | 9.772 | 10 | 8.93 | 20.1 |
| 142.45 | 0.556 | 8.86 | 0.105 | 1.26 | 1.76 | -- | -- | -0.294 | 16.3 | 9.752 | 9 | 8.95 | 20.1 |
| 173.67 | 0.614 | 8.81 | 0.275 | -- | 2.59 | -- | 1.41 | -0.209 | -- | 8.697 | 6 | 8.98 | 19 |
| 197.41 | 0.659 | 8.86 | 0.352 | 2.11 | -- | 0.736 | -- | -0.185 | 16.6 | -- | -- | -- | -- |
| 198.82 | 0.66 | 8.85 | 0.356 | 2.11 | -- | -- | -- | -0.181 | 16.6 | -- | -- | -- | -- |
| 169.8 | 0.607 | 8.84 | -0.0434 | -- | 2.67 | -- | -- | -0.296 | -- | 9.882 | 40 | 8.72 | 18.9 |
| 142.71 | 0.556 | 8.87 | -- | 1.25 | 1.78 | -- | -- | -0.31 | 16.3 | 10.18 | 9 | 8.95 | 20.1 |
| 436.38 | 0.976 | 8.84 | 0.275 | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
| 202.17 | 0.665 | 8.86 | -- | 2.11 | -- | -- | -- | -0.221 | 16.6 | -- | -- | -- | -- |
| 168.58 | 0.605 | 8.86 | -- | -- | 2.64 | -- | -- | -0.357 | -- | 10.69 | 79 | 8.45 | 18.7 |
| 438.38 | 0.977 | 8.84 | -- | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.12 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 2 | 144.55 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 17 | 148.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 25 | 150.54 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 44 | 152.83 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 58 | 153.56 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 59 | 153.62 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 80 | 154.70 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 82 | 154.92 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 85 | 155.01 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 88 | 155.13 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 90 | 155.22 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 91 | 155.25 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 107 | 155.71 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 142 | 156.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 161 | 156.78 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 163 | 156.80 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 171 | 156.98 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 186 | 157.18 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 198 | 157.35 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 201 | 157.39 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 218 | 157.77 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 228 | 157.96 | radiation | 30.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 230 | 157.97 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 235 | 158.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 242 | 158.16 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 274 | 158.45 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 277 | 158.51 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 280 | 158.53 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 281 | 158.59 | temperature | 30.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 289 | 158.66 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 297 | 158.74 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 315 | 158.92 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 330 | 159.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 331 | 159.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 355 | 159.35 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 366 | 159.44 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 378 | 159.55 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 11 |
| 386 | 159.59 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 405 | 159.77 | radiation | 10.0 | 270 | > th | dose independent | sin | 5 | NA |
| 411 | 159.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 413 | 159.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 414 | 159.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 417 | 159.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 418 | 159.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 422 | 159.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 426 | 159.86 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 442 | 159.87 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 455 | 159.98 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 480 | 160.19 | humidity | 80.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 500 | 160.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 503 | 160.45 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 504 | 160.45 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 517 | 160.53 | wind | 7.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 519 | 160.53 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 521 | 160.53 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 522 | 160.53 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 524 | 160.53 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 525 | 160.53 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 526 | 160.53 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 543 | 160.64 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 544 | 160.66 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 551 | 160.69 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 575 | 160.76 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 577 | 160.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 579 | 160.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 590 | 160.84 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 593 | 160.85 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 599 | 160.88 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 14 |
| 600 | 160.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 615 | 161.04 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 660 | 161.28 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 669 | 161.31 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 674 | 161.36 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 682 | 161.39 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 688 | 161.40 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 690 | 161.41 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 691 | 161.41 | radiation | 1.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 726 | 161.53 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 736 | 161.57 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 748 | 161.62 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 750 | 161.62 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 775 | 161.69 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 797 | 161.78 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 805 | 161.80 | radiation | 30.0 | 90 | < th | dose independent | rect. | 15 | 18 |
| 812 | 161.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 820 | 161.84 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 833 | 161.86 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 873 | 161.94 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 887 | 161.95 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 891 | 161.96 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 892 | 161.96 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 899 | 161.99 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 20 |
| 900 | 161.99 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 917 | 162.08 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 920 | 162.08 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 935 | 162.11 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 936 | 162.11 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 941 | 162.14 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 14 |
| 945 | 162.16 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 987 | 162.33 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 5 |