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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0828600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sodium/hydrogen exchanger family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0161) R2 : 0.00756
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0634 (0.034) R2dN8 : 0.00976 R2N8 : 0.00756
σ : 0.304
deviance : 42.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.97 0.283 -1540 9440 0.197 -388000 -0.105 2370000 -0.0438 7.16 995 90 -- --
38.72 0.292 3.28 0.152 0.188 1.1 -0.135 -- -0.0459 7.17 995 90 -- --
37 0.283 -1540 9440 0.197 -388000 -- 2370000 -0.0432 7.29 995 90 -- --
36.6 0.282 3.27 0.145 0.191 1.77 -- -- -0.0415 7.34 994.9 126 -- --
39.04 0.291 -1540 9440 -- -388000 -- 2370000 -0.0403 -- 995 90 -- --
40.06 0.297 3.28 0.161 0.177 -- -0.164 -- -0.0489 7.26 -- -- -- --
40.12 0.297 3.28 0.158 0.176 -- -- -- -0.0483 7.54 -- -- -- --
38.66 0.29 3.28 0.148 -- 1.67 -- -- -0.0405 -- 994.9 122 -- --
37.13 0.284 3.28 -- 0.204 1.8 -- -- -0.0551 7.3 994.9 134 -- --
41.78 0.302 3.28 0.16 -- -- -- -- -0.0456 -- -- -- -- --
40.77 0.299 3.28 -- 0.178 -- -- -- -0.0659 7.48 -- -- -- --
39.24 0.292 3.28 -- -- 1.69 -- -- -0.0568 -- 994.9 126 -- --
42.46 0.304 3.28 -- -- -- -- -- -0.0634 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.40 atmosphere 995.0 10 > th dose independent rect. 3 23
6 35.47 atmosphere 995.0 720 > th dose independent rect. 23 16
7 35.66 atmosphere 1005.0 10 > th dose dependent rect. 2 2
11 35.89 humidity 80.0 14400 < th dose dependent rect. 2 7
16 36.12 humidity 80.0 14400 < th dose dependent rect. 21 13
20 36.22 atmosphere 1000.0 720 > th dose independent rect. 3 8
23 36.28 atmosphere 995.0 720 > th dose independent rect. 7 8
32 36.45 atmosphere 995.0 90 > th dose independent sin 11 NA
33 36.45 temperature 25.0 90 > th dose independent rect. 1 1
34 36.46 atmosphere 995.0 10 > th dose independent sin 11 NA
37 36.48 atmosphere 995.0 90 > th dose independent sin 8 NA
45 36.54 humidity 70.0 14400 > th dose independent rect. 20 14
47 36.55 humidity 70.0 14400 > th dose independent rect. 5 5
58 36.56 humidity 70.0 14400 < th dose independent rect. 8 2
59 36.56 humidity 70.0 14400 > th dose independent rect. 7 3
61 36.56 humidity 70.0 14400 < th dose independent rect. 21 13
63 36.56 atmosphere 995.0 30 > th dose independent rect. 21 23
80 36.62 temperature 25.0 90 > th dose dependent rect. 1 2
89 36.66 atmosphere 1010.0 10 < th dose dependent rect. 2 1
98 36.72 radiation 1.0 43200 < th dose dependent rect. 3 1
99 36.72 atmosphere 1000.0 10 < th dose dependent rect. 7 20
108 36.76 temperature 30.0 90 > th dose dependent rect. 16 18
111 36.77 atmosphere 995.0 10 > th dose independent rect. 11 23
113 36.78 temperature 30.0 10 > th dose independent rect. 16 2
118 36.80 atmosphere 1000.0 90 < th dose independent rect. 6 20
120 36.81 atmosphere 1005.0 90 > th dose independent rect. 2 1
122 36.81 radiation 1.0 4320 < th dose dependent rect. 3 1
129 36.83 wind 3.0 90 < th dose independent rect. 2 1
155 36.85 wind 3.0 14400 > th dose independent rect. 10 2
159 36.85 wind 5.0 14400 < th dose dependent rect. 11 1
161 36.85 atmosphere 1000.0 10 < th dose dependent rect. 16 2
163 36.86 wind 3.0 14400 > th dose independent rect. 19 1
165 36.86 temperature 10.0 30 > th dose independent rect. 2 1
167 36.86 temperature 30.0 30 < th dose independent rect. 2 1
168 36.86 humidity 50.0 30 > th dose independent rect. 2 1
171 36.86 humidity 90.0 30 > th dose independent rect. 2 1
172 36.86 atmosphere 995.0 30 > th dose independent rect. 2 1
173 36.86 atmosphere 1010.0 30 < th dose independent rect. 2 1
175 36.86 radiation 1.0 30 < th dose independent rect. 2 1
180 36.86 precipitation 0.1 30 < th dose independent rect. 2 1
183 36.86 temperature 10.0 30 > th dose independent rect. 3 23
184 36.86 wind 5.0 30 < th dose dependent rect. 2 1
187 36.86 temperature 10.0 30 > th dose dependent rect. 2 1
191 36.86 radiation 1.0 30 < th dose dependent rect. 2 1
197 36.86 precipitation 0.1 30 < th dose dependent rect. 2 1
198 36.87 wind 1.0 30 > th dose independent rect. 2 1
202 36.87 humidity 50.0 30 > th dose dependent rect. 2 1
209 36.88 temperature 30.0 10 > th dose independent sin 11 NA
216 36.88 temperature 30.0 30 < th dose dependent rect. 2 1
232 36.90 wind 9.0 1440 < th dose independent rect. 3 1
233 36.90 temperature 10.0 1440 > th dose independent rect. 3 1
236 36.90 temperature 30.0 1440 < th dose independent rect. 3 1
241 36.90 humidity 50.0 1440 > th dose independent rect. 3 1
250 36.90 atmosphere 995.0 1440 > th dose independent rect. 3 1
251 36.90 radiation 1.0 1440 < th dose independent rect. 3 1
272 36.90 temperature 10.0 1440 > th dose independent rect. 4 23
327 36.94 atmosphere 995.0 270 > th dose independent sin 5 NA
331 36.94 temperature 30.0 30 > th dose dependent rect. 16 2
334 36.94 atmosphere 1000.0 270 < th dose dependent rect. 6 12
342 36.96 humidity 70.0 30 < th dose independent rect. 18 1
343 36.96 precipitation 0.1 30 < th dose independent rect. 3 23
349 36.96 precipitation 0.1 30 < th dose dependent rect. 3 23
351 36.97 temperature 30.0 30 > th dose independent rect. 18 1
373 36.98 wind 3.0 14400 < th dose independent rect. 10 2
397 36.99 atmosphere 1000.0 10 < th dose independent rect. 17 1
427 37.00 wind 3.0 14400 < th dose independent rect. 19 1
430 37.00 precipitation 0.1 720 < th dose independent rect. 15 8
432 37.00 precipitation 0.1 720 < th dose dependent rect. 15 8
451 37.01 temperature 30.0 90 > th dose dependent sin 11 NA
481 37.03 temperature 30.0 270 > th dose dependent rect. 14 21
482 37.04 atmosphere 995.0 90 < th dose dependent sin 12 NA
487 37.05 atmosphere 995.0 90 < th dose independent sin 8 NA
488 37.05 atmosphere 995.0 90 < th dose independent sin 12 NA
489 37.05 humidity 90.0 90 < th dose independent rect. 2 1
503 37.06 atmosphere 995.0 10 < th dose independent sin 11 NA
511 37.06 atmosphere 995.0 90 < th dose independent rect. 17 22
512 37.06 atmosphere 995.0 10 < th dose dependent sin 10 NA
524 37.07 wind 9.0 30 < th dose independent rect. 3 23
566 37.09 wind 1.0 14400 < th dose dependent rect. 6 1
571 37.10 humidity 80.0 14400 < th dose dependent sin 8 NA
583 37.12 temperature 30.0 270 > th dose dependent rect. 14 4
588 37.13 atmosphere 995.0 90 > th dose independent rect. 9 23
589 37.13 atmosphere 995.0 30 > th dose independent rect. 23 23
610 37.14 atmosphere 995.0 90 < th dose dependent sin 8 NA
643 37.14 atmosphere 995.0 90 < th dose dependent rect. 17 22
646 37.15 wind 1.0 14400 < th dose independent rect. 4 3
647 37.15 humidity 90.0 720 < th dose independent rect. 1 3
668 37.17 atmosphere 995.0 270 > th dose independent rect. 7 23
673 37.17 wind 1.0 14400 < th dose dependent rect. 4 3
695 37.18 temperature 30.0 270 > th dose dependent sin 13 NA
707 37.19 radiation 10.0 90 > th dose dependent rect. 17 1
721 37.19 atmosphere 1000.0 10 < th dose dependent rect. 1 18
738 37.21 humidity 60.0 14400 < th dose independent rect. 11 1
744 37.21 atmosphere 995.0 90 < th dose dependent sin 16 NA
750 37.21 humidity 70.0 4320 > th dose dependent rect. 3 8
767 37.22 precipitation 0.1 720 < th dose independent rect. 11 16
769 37.22 temperature 30.0 1440 > th dose independent rect. 15 20
776 37.22 precipitation 0.1 720 < th dose dependent rect. 11 16
782 37.23 wind 1.0 14400 > th dose independent rect. 4 3
783 37.23 temperature 30.0 1440 < th dose independent rect. 15 20
786 37.23 humidity 80.0 4320 > th dose dependent rect. 6 3
792 37.24 temperature 10.0 720 > th dose independent rect. 15 8
801 37.24 temperature 10.0 720 > th dose independent rect. 23 16
824 37.25 atmosphere 1000.0 720 < th dose independent rect. 6 3
835 37.26 humidity 70.0 4320 > th dose independent rect. 16 1
836 37.26 atmosphere 1000.0 720 < th dose independent rect. 7 1
840 37.26 temperature 25.0 720 > th dose dependent rect. 3 6
848 37.27 atmosphere 1000.0 270 < th dose dependent rect. 14 1
879 37.28 humidity 70.0 4320 < th dose independent rect. 16 1
882 37.28 wind 1.0 14400 < th dose dependent rect. 2 1
919 37.29 temperature 30.0 1440 > th dose dependent rect. 15 1
923 37.29 wind 1.0 14400 < th dose dependent rect. 2 6
926 37.29 atmosphere 1000.0 10 < th dose dependent rect. 14 13
927 37.29 humidity 50.0 4320 > th dose dependent rect. 23 16
933 37.30 radiation 10.0 90 > th dose independent rect. 17 1
951 37.30 wind 1.0 14400 > th dose dependent rect. 11 1
953 37.30 temperature 25.0 720 > th dose dependent rect. 6 3
959 37.30 atmosphere 1000.0 10 < th dose dependent rect. 14 5
989 37.31 humidity 50.0 14400 > th dose dependent rect. 8 1