Os03g0827900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0827900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.72 | 0.432 | 8.68 | 1.38 | 1.5 | -1.28 | 0.499 | 4.92 | 0.356 | 4.81 | 26.3 | 11 | -- | -- |
| 90.83 | 0.447 | 8.74 | 0.929 | 1.53 | -0.888 | 0.00888 | -- | 0.249 | 4.73 | 26.3 | 11 | -- | -- |
| 84.77 | 0.432 | 8.69 | 1.33 | 1.52 | -1.35 | -- | 5.01 | 0.325 | 4.8 | 26.7 | 10 | -- | -- |
| 90.78 | 0.447 | 8.74 | 0.929 | 1.53 | -0.91 | -- | -- | 0.249 | 4.73 | 26.26 | 8 | -- | -- |
| 157.56 | 0.585 | 8.69 | 1.63 | -- | -2.35 | -- | 4.4 | 0.57 | -- | 24.31 | 139 | -- | -- |
| 102.21 | 0.474 | 8.75 | 0.81 | 1.79 | -- | 0.294 | -- | 0.222 | 4.44 | -- | -- | -- | -- |
| 102.44 | 0.474 | 8.75 | 0.808 | 1.79 | -- | -- | -- | 0.22 | 4.43 | -- | -- | -- | -- |
| 167.65 | 0.603 | 8.71 | 1.19 | -- | -1.99 | -- | -- | 0.466 | -- | 24.2 | 139 | -- | -- |
| 112.79 | 0.497 | 8.76 | -- | 1.61 | -0.687 | -- | -- | 0.141 | 4.63 | 26.31 | 9 | -- | -- |
| 274.42 | 0.774 | 8.76 | 0.878 | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
| 119.64 | 0.512 | 8.77 | -- | 1.81 | -- | -- | -- | 0.131 | 4.42 | -- | -- | -- | -- |
| 204.19 | 0.666 | 8.76 | -- | -- | -1.82 | -- | -- | 0.308 | -- | 24.3 | 139 | -- | -- |
| 294.76 | 0.801 | 8.78 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 7 | 77.22 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 8 | 77.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 16 | 77.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 30 | 78.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 46 | 79.05 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 65 | 79.32 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 76 | 79.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 105 | 79.87 | temperature | 25 | 10 | > th | dose dependent | sin | 1 | NA |
| 116 | 79.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 120 | 80.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 151 | 80.26 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 14 |
| 170 | 80.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 354 | 81.88 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 454 | 82.73 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 567 | 83.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 609 | 83.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 763 | 84.70 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 16 |
| 774 | 84.78 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 781 | 84.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 791 | 84.87 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 799 | 84.91 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 815 | 84.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 828 | 85.01 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 841 | 85.07 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 880 | 85.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 882 | 85.20 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 888 | 85.23 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 931 | 85.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 966 | 85.55 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 972 | 85.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 19 |