Os03g0826900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0826900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.5 | 0.73 | 7.87 | 0.585 | 3 | 1.79 | -1.91 | -2.53 | -0.928 | 10.8 | 67.99 | 1004 | -- | -- |
| 249.82 | 0.736 | 7.86 | 0.347 | 2.94 | 1.9 | -2.43 | -- | -0.898 | 10.8 | 71.28 | 969 | -- | -- |
| 252.55 | 0.74 | 7.86 | 0.666 | 2.95 | 1.78 | -- | -3.76 | -0.925 | 10.8 | 67.39 | 957 | -- | -- |
| 279.16 | 0.778 | 7.87 | 0.242 | 2.99 | 1.78 | -- | -- | -0.943 | 10.8 | 71 | 981 | -- | -- |
| 574.17 | 1.12 | 7.89 | 0.643 | -- | 4.65 | -- | -5.39 | -0.686 | -- | 69.09 | 889 | -- | -- |
| 293.03 | 0.803 | 7.9 | 0.372 | 3.61 | -- | -2.56 | -- | -1.14 | 10.8 | -- | -- | -- | -- |
| 320.52 | 0.838 | 7.9 | 0.269 | 3.63 | -- | -- | -- | -1.15 | 10.8 | -- | -- | -- | -- |
| 611.07 | 1.15 | 7.9 | 0.202 | -- | 4.51 | -- | -- | -0.739 | -- | 70.27 | 889 | -- | -- |
| 280.33 | 0.78 | 7.89 | -- | 3 | 1.73 | -- | -- | -1 | 10.9 | 72 | 970 | -- | -- |
| 1135.43 | 1.57 | 8 | 0.194 | -- | -- | -- | -- | -1.17 | -- | -- | -- | -- | -- |
| 322.43 | 0.84 | 7.91 | -- | 3.62 | -- | -- | -- | -1.18 | 10.8 | -- | -- | -- | -- |
| 611.46 | 1.15 | 7.9 | -- | -- | 4.57 | -- | -- | -0.762 | -- | 71 | 889 | -- | -- |
| 1136.42 | 1.57 | 8 | -- | -- | -- | -- | -- | -1.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.24 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 2 | 241.63 | humidity | 80 | 720 | > th | dose dependent | sin | 19 | NA |
| 5 | 241.85 | humidity | 80 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 8 | 242.04 | humidity | 80 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 38 | 243.31 | humidity | 80 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 42 | 243.41 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 104 | 244.29 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 12 |
| 113 | 244.40 | humidity | 80 | 720 | > th | dose dependent | rect. | 4 | 19 |
| 125 | 244.47 | humidity | 80 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 131 | 244.52 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 148 | 244.67 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 158 | 244.71 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 182 | 244.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 212 | 245.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 233 | 245.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 244 | 245.39 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 272 | 245.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 401 | 246.14 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 418 | 246.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 450 | 246.39 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 460 | 246.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 515 | 246.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 574 | 246.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 583 | 246.88 | humidity | 70 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 613 | 246.98 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 640 | 247.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 652 | 247.15 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 654 | 247.15 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 694 | 247.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 788 | 247.73 | humidity | 70 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 816 | 247.89 | humidity | 70 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 873 | 248.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 880 | 248.16 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 7 |
| 922 | 248.32 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |