Os03g0824500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0824500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.61 | 0.334 | 11.8 | -0.69 | 0.3 | 0.102 | -0.307 | -2.34 | -0.345 | 17.2 | 21.3 | 1875 | -- | -- |
| 56.96 | 0.352 | 11.8 | -0.493 | 0.309 | 0.716 | -0.0526 | -- | -0.307 | 17.3 | 18.5 | 10981 | -- | -- |
| 50.83 | 0.332 | 11.8 | -0.693 | 0.298 | 0.0961 | -- | -2.37 | -0.346 | 17.4 | 21.34 | 1868 | -- | -- |
| 54.03 | 0.342 | 11.8 | -0.692 | 0.289 | 0.938 | -- | -- | -0.331 | 17.2 | 14.7 | 42324 | -- | -- |
| 55.3 | 0.346 | 11.8 | -0.737 | -- | 0.155 | -- | -2.28 | -0.38 | -- | 21.7 | 1858 | -- | -- |
| 64.83 | 0.377 | 11.7 | 0.0384 | 0.294 | -- | -0.422 | -- | -0.127 | 17.4 | -- | -- | -- | -- |
| 65.27 | 0.378 | 11.7 | 0.0392 | 0.291 | -- | -- | -- | -0.129 | 17.5 | -- | -- | -- | -- |
| 58.38 | 0.356 | 11.8 | -0.675 | -- | 0.895 | -- | -- | -0.333 | -- | 14.5 | 42311 | -- | -- |
| 60.07 | 0.361 | 11.7 | -- | 0.296 | 0.413 | -- | -- | -0.186 | 17.4 | 12.3 | 47520 | -- | -- |
| 69.68 | 0.39 | 11.7 | 0.0295 | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
| 65.31 | 0.378 | 11.7 | -- | 0.291 | -- | -- | -- | -0.134 | 17.5 | -- | -- | -- | -- |
| 63.58 | 0.371 | 11.7 | -- | -- | 0.423 | -- | -- | -0.188 | -- | 9.3 | 43543 | -- | -- |
| 69.71 | 0.39 | 11.7 | -- | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.27 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 3 | 48.47 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 16 | 49.48 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 18 | 49.53 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 19 | 49.60 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 21 | 49.62 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 24 | 49.67 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 36 | 49.81 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 51 | 49.94 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 72 | 50.02 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 77 | 50.06 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 123 | 50.23 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 127 | 50.25 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 155 | 50.37 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 188 | 50.50 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 190 | 50.51 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 209 | 50.59 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 214 | 50.59 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 215 | 50.60 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 228 | 50.63 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 251 | 50.69 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 264 | 50.71 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 284 | 50.76 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 285 | 50.76 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 289 | 50.76 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 299 | 50.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 304 | 50.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 308 | 50.79 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 321 | 50.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 326 | 50.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 341 | 50.83 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 347 | 50.84 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 371 | 50.89 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 374 | 50.89 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 439 | 50.98 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 452 | 50.99 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 456 | 51.00 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 467 | 51.00 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 474 | 51.01 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 520 | 51.04 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 550 | 51.06 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 579 | 51.08 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 581 | 51.09 | wind | 7.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 609 | 51.11 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 619 | 51.12 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 630 | 51.13 | wind | 7.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 632 | 51.13 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 638 | 51.13 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 8 |
| 642 | 51.14 | wind | 5.0 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 647 | 51.14 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 656 | 51.15 | temperature | 20.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 661 | 51.15 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 667 | 51.16 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 673 | 51.16 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 692 | 51.18 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 729 | 51.20 | wind | 7.0 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 745 | 51.21 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 795 | 51.23 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 800 | 51.23 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 825 | 51.24 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 873 | 51.26 | atmosphere | 1000.0 | 14400 | > th | dose dependent | sin | 18 | NA |
| 905 | 51.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 914 | 51.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 926 | 51.29 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 974 | 51.31 | temperature | 20.0 | 1440 | < th | dose independent | sin | 14 | NA |