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Os03g0823000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine protein kinase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.79 (0.0264) R2 : 0.637
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.8 (0.0841) R2dE : 0.43 R2E : 0.546
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.514 (0.0593) R2dN8 : 0.0913 R2N8 : 0.208
σ : 0.487
deviance : 109.19
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 6.108
memory length : 22890
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.61 0.44 9.8 0.564 0.359 1.07 1.02 -2.62 0.756 4.17 14.64 5768 -- --
90.15 0.442 9.73 0.973 0.358 1.39 0.989 -- 0.771 4.22 10.53 10339 -- --
88.64 0.438 9.81 0.552 0.407 1.19 -- -2.26 0.654 5.47 11.88 9147 -- --
91.79 0.446 9.73 0.964 0.379 1.41 -- -- 0.76 5.51 7.373 10076 -- --
96.59 0.458 9.82 0.491 -- 1.24 -- -2.09 0.629 -- 3.116 9999 -- --
122.01 0.518 9.63 1.79 0.386 -- 1.02 -- 1.21 4.07 -- -- -- --
124.17 0.522 9.63 1.78 0.418 -- -- -- 1.2 5.15 -- -- -- --
99.12 0.464 9.73 0.967 -- 1.43 -- -- 0.759 -- 7.835 9960 -- --
101.32 0.469 9.78 -- 0.39 1.78 -- -- 0.513 5.58 4.779 22973 -- --
133.34 0.54 9.63 1.8 -- -- -- -- 1.21 -- -- -- -- --
207.91 0.674 9.67 -- 0.45 -- -- -- 1 5 -- -- -- --
109.19 0.487 9.79 -- -- 1.8 -- -- 0.514 -- 6.108 22890 -- --
218.55 0.69 9.68 -- -- -- -- -- 1.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.52 humidity 90 14400 > th dose dependent rect. 2 15
2 81.55 humidity 90 14400 > th dose dependent rect. 1 17
13 81.93 radiation 1 43200 > th dose independent rect. 18 11
22 82.21 radiation 30 14400 < th dose dependent rect. 24 5
24 82.32 humidity 90 14400 > th dose dependent sin 4 NA
50 82.65 humidity 90 14400 > th dose dependent rect. 10 20
64 82.78 radiation 1 43200 > th dose independent rect. 18 1
87 83.02 radiation 1 43200 < th dose independent rect. 18 11
89 83.04 radiation 1 43200 < th dose dependent rect. 24 5
132 83.25 humidity 90 14400 > th dose dependent rect. 5 2
139 83.32 radiation 1 43200 < th dose dependent rect. 19 10
142 83.34 humidity 90 14400 > th dose dependent rect. 4 4
168 83.52 humidity 90 14400 > th dose dependent no NA NA
194 83.63 wind 3 43200 < th dose dependent rect. 8 1
198 83.65 humidity 80 43200 < th dose independent rect. 4 3
212 83.73 humidity 80 43200 > th dose independent rect. 2 1
215 83.74 radiation 1 43200 < th dose independent rect. 18 9
217 83.75 radiation 1 43200 < th dose independent rect. 18 7
223 83.77 radiation 1 43200 < th dose independent rect. 18 1
233 83.80 wind 3 43200 > th dose independent rect. 9 1
242 83.89 wind 3 43200 < th dose independent rect. 9 1
249 83.92 wind 1 43200 < th dose dependent rect. 24 2
264 84.11 humidity 80 43200 < th dose independent rect. 4 1
270 84.15 humidity 90 14400 > th dose dependent rect. 5 23
275 84.19 humidity 80 43200 < th dose dependent rect. 21 12
311 84.46 wind 1 43200 < th dose independent rect. 24 2
316 84.50 radiation 40 4320 < th dose dependent rect. 18 11
323 84.64 humidity 80 43200 < th dose independent rect. 21 10
343 84.83 humidity 80 43200 < th dose independent rect. 21 2
368 85.02 wind 3 43200 < th dose independent rect. 8 5
369 85.04 wind 3 43200 > th dose independent rect. 8 6
383 85.17 wind 1 43200 > th dose independent rect. 24 2
392 85.23 humidity 80 43200 > th dose independent rect. 21 2
395 85.26 wind 3 43200 > th dose independent rect. 20 2
396 85.27 wind 3 43200 > th dose independent rect. 6 8
407 85.35 humidity 80 43200 < th dose dependent rect. 22 1
420 85.46 wind 3 43200 < th dose independent rect. 20 2
422 85.46 wind 3 43200 < th dose independent rect. 6 8
467 85.80 humidity 80 43200 > th dose independent rect. 21 10
488 85.94 humidity 60 43200 > th dose independent rect. 20 16
496 86.01 humidity 80 43200 > th dose independent rect. 21 8
498 86.01 wind 5 43200 < th dose dependent rect. 19 3
505 86.05 temperature 20 14400 < th dose independent rect. 20 2
511 86.09 temperature 20 14400 < th dose independent rect. 19 4
533 86.20 humidity 90 14400 > th dose independent rect. 23 17
546 86.26 wind 3 43200 < th dose dependent rect. 6 6
549 86.26 wind 1 43200 < th dose dependent rect. 10 19
553 86.27 humidity 60 43200 < th dose independent rect. 20 16
571 86.33 radiation 1 1440 < th dose dependent rect. 18 13
578 86.35 wind 9 43200 < th dose dependent rect. 6 9
579 86.36 radiation 20 43200 < th dose independent rect. 8 1
580 86.36 humidity 90 14400 > th dose independent rect. 23 20
597 86.41 humidity 90 14400 > th dose independent rect. 10 20
598 86.42 humidity 90 14400 > th dose dependent rect. 21 6
603 86.43 wind 1 43200 < th dose dependent rect. 8 21
629 86.51 humidity 70 43200 < th dose independent rect. 7 1
640 86.52 humidity 90 14400 > th dose independent rect. 1 12
653 86.55 wind 1 43200 > th dose dependent rect. 6 9
659 86.57 humidity 60 43200 < th dose independent sin 9 NA
665 86.57 wind 9 43200 < th dose dependent rect. 8 7
676 86.59 wind 5 43200 < th dose dependent rect. 11 1
679 86.60 temperature 20 14400 > th dose independent rect. 18 6
685 86.62 temperature 20 14400 > th dose independent rect. 19 4
701 86.65 wind 3 43200 > th dose independent rect. 6 4
712 86.68 temperature 20 14400 > th dose independent rect. 20 2
744 86.75 humidity 80 43200 < th dose dependent rect. 5 2
750 86.77 wind 3 43200 < th dose independent rect. 11 1
754 86.78 humidity 90 14400 > th dose independent sin 6 NA
759 86.78 wind 1 43200 > th dose dependent rect. 8 7
770 86.81 wind 9 43200 < th dose dependent rect. 3 14
771 86.82 wind 3 43200 > th dose independent rect. 11 2
784 86.86 humidity 60 43200 > th dose independent sin 9 NA
816 86.90 wind 9 43200 < th dose dependent rect. 5 18
886 87.03 wind 9 43200 < th dose dependent sin 1 NA
890 87.04 wind 9 43200 < th dose dependent rect. 3 20
901 87.06 wind 3 43200 > th dose dependent rect. 9 15
902 87.06 wind 3 43200 > th dose dependent rect. 5 17
938 87.11 wind 9 43200 < th dose dependent rect. 8 15
946 87.12 radiation 20 14400 < th dose dependent rect. 2 3
953 87.13 wind 3 43200 > th dose dependent sin 0 NA
981 87.16 temperature 20 14400 < th dose dependent rect. 23 1