Os03g0822900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, BED-type predicted domain containing protein.
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Os03g0822900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, BED-type predicted domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.69 | 0.389 | 9.6 | 0.752 | 0.248 | 0.766 | -0.469 | -0.34 | 0.0293 | 9.33 | 25.1 | 15 | -- | -- |
| 68.74 | 0.386 | 9.59 | 0.787 | 0.252 | 0.74 | -0.485 | -- | 0.0393 | 9.44 | 25.1 | 14 | -- | -- |
| 69.4 | 0.388 | 9.6 | 0.721 | 0.251 | 0.745 | -- | -0.533 | 0.0272 | 9.94 | 25.12 | 14 | -- | -- |
| 69.52 | 0.388 | 9.59 | 0.782 | 0.255 | 0.697 | -- | -- | 0.0441 | 10 | 25.12 | 14 | -- | -- |
| 73 | 0.398 | 9.61 | 0.7 | -- | 0.832 | -- | -0.633 | 0.0176 | -- | 25.1 | 12 | -- | -- |
| 76.85 | 0.411 | 9.58 | 0.893 | 0.418 | -- | -0.103 | -- | 0.0987 | 12.5 | -- | -- | -- | -- |
| 76.9 | 0.411 | 9.58 | 0.889 | 0.419 | -- | -- | -- | 0.0984 | 12.6 | -- | -- | -- | -- |
| 73.22 | 0.399 | 9.6 | 0.767 | -- | 0.788 | -- | -- | 0.0368 | -- | 25.1 | 11 | -- | -- |
| 84.99 | 0.429 | 9.61 | -- | 0.246 | 0.894 | -- | -- | -0.0553 | 8.63 | 25.1 | 15 | -- | -- |
| 87.89 | 0.438 | 9.59 | 0.874 | -- | -- | -- | -- | 0.0912 | -- | -- | -- | -- | -- |
| 97.72 | 0.462 | 9.6 | -- | 0.405 | -- | -- | -- | -0.000577 | 12.5 | -- | -- | -- | -- |
| 88.42 | 0.438 | 9.62 | -- | -- | 0.9 | -- | -- | -0.055 | -- | 25.08 | 13 | -- | -- |
| 108.05 | 0.485 | 9.61 | -- | -- | -- | -- | -- | -0.00576 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.11 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 11 | 58.06 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 13 | 58.25 | temperature | 30.0 | 30 | < th | dose independent | rect. | 9 | 20 |
| 14 | 58.26 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 33 | 59.41 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 35 | 59.53 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 38 | 59.66 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 46 | 59.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 10 |
| 47 | 59.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 51 | 60.17 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 53 | 60.17 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 61 | 60.28 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 62 | 60.28 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 64 | 60.28 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 68 | 60.28 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 69 | 60.28 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 70 | 60.29 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 71 | 60.33 | temperature | 30.0 | 30 | < th | dose independent | rect. | 11 | 18 |
| 75 | 60.42 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 14 |
| 76 | 60.42 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 83 | 60.55 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 94 | 60.71 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 105 | 61.03 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 113 | 61.20 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 120 | 61.27 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 123 | 61.36 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 125 | 61.39 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 137 | 61.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 23 |
| 139 | 61.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 142 | 61.61 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 167 | 61.92 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 168 | 61.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 171 | 61.92 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 175 | 61.92 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 181 | 61.92 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 182 | 61.92 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 191 | 61.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 199 | 61.99 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 202 | 62.01 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 213 | 62.11 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 217 | 62.12 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 226 | 62.21 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 236 | 62.27 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 239 | 62.28 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 241 | 62.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 243 | 62.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 244 | 62.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 249 | 62.28 | radiation | 20.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 260 | 62.32 | wind | 9.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 263 | 62.33 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 264 | 62.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 1 |
| 265 | 62.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 266 | 62.35 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 273 | 62.39 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 325 | 62.68 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 340 | 62.77 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 20 |
| 341 | 62.77 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 350 | 62.81 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 353 | 62.82 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 355 | 62.82 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 356 | 62.82 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 362 | 62.84 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 363 | 62.84 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 4 |
| 365 | 62.85 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 3 |
| 368 | 62.85 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 372 | 62.87 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 375 | 62.91 | temperature | 15.0 | 30 | > th | dose independent | rect. | 11 | 18 |
| 376 | 62.91 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 388 | 62.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 391 | 62.94 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 392 | 62.94 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 393 | 62.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 408 | 63.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 427 | 63.06 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 447 | 63.17 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 20 |
| 448 | 63.17 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 466 | 63.23 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 470 | 63.23 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 524 | 63.43 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 572 | 63.61 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 12 |
| 581 | 63.63 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 586 | 63.65 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 11 |
| 609 | 63.74 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 610 | 63.74 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 613 | 63.75 | radiation | 1.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 614 | 63.75 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 617 | 63.76 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 632 | 63.81 | temperature | 25.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 647 | 63.85 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 652 | 63.88 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 664 | 63.94 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 665 | 63.94 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 11 | 18 |
| 706 | 64.10 | temperature | 25.0 | 720 | > th | dose independent | rect. | 5 | 5 |
| 707 | 64.10 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 744 | 64.15 | radiation | 1.0 | 90 | > th | dose independent | sin | 11 | NA |
| 748 | 64.15 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 769 | 64.20 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 780 | 64.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 786 | 64.24 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 789 | 64.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 14 |
| 807 | 64.32 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 856 | 64.43 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 2 |
| 857 | 64.43 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 914 | 64.52 | radiation | 1.0 | 90 | < th | dose independent | sin | 11 | NA |
| 917 | 64.53 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 975 | 64.60 | radiation | 1.0 | 10 | > th | dose independent | sin | 10 | NA |
| 978 | 64.61 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 990 | 64.66 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 6 |