Os03g0822100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase (Fragment).
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Os03g0822100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.81 | 0.548 | 7.86 | -2.35 | 1.34 | 1.08 | 1.33 | 1.95 | -0.486 | 19 | 7.617 | 100 | -- | -- |
| 142.01 | 0.555 | 7.86 | -2.3 | 1.33 | 0.925 | 1.05 | -- | -0.484 | 18.8 | 4.379 | 106 | -- | -- |
| 139.87 | 0.551 | 7.86 | -2.35 | 1.34 | 0.987 | -- | 1.89 | -0.475 | 18.6 | 13.06 | 106 | -- | -- |
| 144.72 | 0.56 | 7.86 | -2.33 | 1.34 | 0.915 | -- | -- | -0.473 | 18.8 | 4.22 | 112 | -- | -- |
| 190.32 | 0.643 | 7.83 | -2.36 | -- | 1.37 | -- | 1.19 | -0.52 | -- | -0.003134 | 617 | -- | -- |
| 152.95 | 0.58 | 7.84 | -2.32 | 1.43 | -- | 1.15 | -- | -0.431 | 17.5 | -- | -- | -- | -- |
| 156.21 | 0.585 | 7.84 | -2.32 | 1.44 | -- | -- | -- | -0.425 | 17.5 | -- | -- | -- | -- |
| 191.72 | 0.645 | 7.85 | -2.43 | -- | 1.43 | -- | -- | -0.583 | -- | -6.892 | 617 | -- | -- |
| 287.9 | 0.79 | 7.8 | -- | 1.38 | 0.877 | -- | -- | -0.213 | 18.7 | 4.158 | 106 | -- | -- |
| 264.14 | 0.759 | 7.82 | -2.37 | -- | -- | -- | -- | -0.461 | -- | -- | -- | -- | -- |
| 298.66 | 0.808 | 7.78 | -- | 1.48 | -- | -- | -- | -0.167 | 17.4 | -- | -- | -- | -- |
| 347.58 | 0.868 | 7.79 | -- | -- | 1.36 | -- | -- | -0.306 | -- | -33.99 | 608 | -- | -- |
| 412.62 | 0.948 | 7.76 | -- | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.41 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 28 | 132.75 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 16 |
| 33 | 132.87 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 45 | 133.22 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 16 |
| 47 | 133.31 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 48 | 133.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 57 | 133.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 63 | 133.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 74 | 133.73 | radiation | 40 | 270 | < th | dose dependent | sin | 8 | NA |
| 80 | 133.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 121 | 134.07 | radiation | 40 | 90 | < th | dose dependent | sin | 2 | NA |
| 131 | 134.15 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 135 | 134.23 | radiation | 1 | 270 | > th | dose dependent | sin | 8 | NA |
| 169 | 134.42 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 171 | 134.45 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 178 | 134.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 211 | 134.81 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 236 | 134.95 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 322 | 135.30 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 365 | 135.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 459 | 135.76 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 7 |
| 524 | 135.85 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 563 | 135.96 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 565 | 135.97 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 590 | 136.01 | radiation | 10 | 270 | < th | dose independent | sin | 6 | NA |
| 601 | 136.04 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 617 | 136.08 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 12 |
| 638 | 136.11 | radiation | 10 | 90 | > th | dose dependent | no | NA | NA |
| 737 | 136.16 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 797 | 136.24 | radiation | 10 | 270 | > th | dose independent | sin | 6 | NA |
| 974 | 136.53 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 8 |