Os03g0822000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alpha-expansin OsEXPA7.
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Os03g0822000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alpha-expansin OsEXPA7.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.7 | 0.537 | 3.3 | -0.251 | 0.631 | 0.216 | 0.0452 | 1.31 | -0.153 | 6.78 | 25.2 | 818 | -- | -- |
| 132.44 | 0.536 | 3.33 | -0.6 | 0.556 | 0.245 | -0.442 | -- | -0.179 | 6.77 | 32.9 | 1409 | -- | -- |
| 130.71 | 0.532 | 3.3 | -0.254 | 0.631 | 0.217 | -- | 1.3 | -0.154 | 6.78 | 25.2 | 822 | -- | -- |
| 132.38 | 0.536 | 3.31 | -0.612 | 0.553 | 0.27 | -- | -- | -0.117 | 6.52 | 32.93 | 1423 | -- | -- |
| 147.46 | 0.566 | 3.32 | -0.271 | -- | 0.269 | -- | 1.23 | -0.157 | -- | 25 | 1306 | -- | -- |
| 135.94 | 0.547 | 3.32 | -0.535 | 0.564 | -- | -0.284 | -- | -0.17 | 6.42 | -- | -- | -- | -- |
| 136.12 | 0.546 | 3.32 | -0.54 | 0.564 | -- | -- | -- | -0.169 | 6.32 | -- | -- | -- | -- |
| 148.25 | 0.567 | 3.32 | -0.611 | -- | 0.287 | -- | -- | -0.113 | -- | 32.8 | 1409 | -- | -- |
| 141.93 | 0.555 | 3.3 | -- | 0.553 | 0.19 | -- | -- | -0.0723 | 6.4 | 33 | 1470 | -- | -- |
| 152.61 | 0.577 | 3.33 | -0.525 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 143.8 | 0.561 | 3.31 | -- | 0.556 | -- | -- | -- | -0.109 | 6.37 | -- | -- | -- | -- |
| 157.48 | 0.584 | 3.31 | -- | -- | 0.211 | -- | -- | -0.052 | -- | 32.99 | 1392 | -- | -- |
| 159.88 | 0.59 | 3.32 | -- | -- | -- | -- | -- | -0.0987 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 2 | 125.25 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 9 | 125.25 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 32 | 125.54 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 10 |
| 33 | 125.55 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 12 |
| 61 | 126.52 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 12 |
| 72 | 126.80 | temperature | 25 | 720 | > th | dose independent | sin | 11 | NA |
| 86 | 126.95 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 3 | 6 |
| 91 | 126.99 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 114 | 127.18 | temperature | 25 | 720 | < th | dose independent | sin | 11 | NA |
| 154 | 127.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 222 | 128.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 226 | 128.33 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 3 |
| 275 | 128.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 277 | 128.76 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 1 |
| 280 | 128.79 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 317 | 128.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 324 | 129.00 | temperature | 25 | 90 | > th | dose independent | rect. | 2 | 6 |
| 345 | 129.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 6 |
| 358 | 129.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 361 | 129.16 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 377 | 129.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 384 | 129.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 389 | 129.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 413 | 129.32 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 418 | 129.35 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 3 | 2 |
| 463 | 129.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 471 | 129.53 | temperature | 25 | 1440 | > th | dose dependent | sin | 11 | NA |
| 474 | 129.55 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 2 |
| 527 | 129.68 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 569 | 129.77 | radiation | 20 | 90 | < th | dose independent | rect. | 10 | 20 |
| 598 | 129.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 654 | 129.94 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 1 |
| 672 | 129.97 | wind | 1 | 10 | < th | dose independent | rect. | 4 | 6 |
| 702 | 130.04 | wind | 1 | 10 | < th | dose dependent | rect. | 4 | 6 |
| 709 | 130.06 | wind | 1 | 10 | < th | dose independent | sin | 0 | NA |
| 714 | 130.06 | wind | 1 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 716 | 130.06 | wind | 1 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 724 | 130.07 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 733 | 130.10 | wind | 1 | 10 | < th | dose independent | rect. | 4 | 14 |
| 741 | 130.11 | wind | 1 | 10 | < th | dose independent | rect. | 4 | 12 |
| 747 | 130.12 | wind | 1 | 10 | < th | dose independent | rect. | 4 | 10 |
| 757 | 130.15 | wind | 1 | 10 | > th | dose independent | rect. | 22 | 12 |
| 809 | 130.22 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 820 | 130.22 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 850 | 130.25 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 859 | 130.27 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 892 | 130.30 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 893 | 130.30 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 913 | 130.33 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 916 | 130.34 | wind | 1 | 10 | > th | dose independent | sin | 1 | NA |
| 932 | 130.35 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 973 | 130.40 | wind | 1 | 10 | > th | dose independent | rect. | 7 | 22 |
| 981 | 130.41 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 2 |