Os03g0821900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
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Os03g0821900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.1 | 0.231 | 9.87 | 1.46 | 0.248 | -1.59 | -0.622 | -0.771 | 0.182 | 7.74 | 9.115 | 12 | -- | -- |
| 24.51 | 0.232 | 9.85 | 1.57 | 0.254 | -1.63 | -0.688 | -- | 0.214 | 8.18 | 9.115 | 12 | -- | -- |
| 25.08 | 0.235 | 9.87 | 1.41 | 0.261 | -1.54 | -- | -0.929 | 0.167 | 7.35 | 9.115 | 12 | -- | -- |
| 25.81 | 0.238 | 9.86 | 1.53 | 0.266 | -1.55 | -- | -- | 0.201 | 7.31 | 9.115 | 12 | -- | -- |
| 27.24 | 0.243 | 9.87 | 1.47 | -- | -1.63 | -- | -0.743 | 0.188 | -- | 10.71 | 99 | -- | -- |
| 48.5 | 0.326 | 9.9 | 1.24 | 0.566 | -- | 0.441 | -- | -0.014 | 3.86 | -- | -- | -- | -- |
| 49.01 | 0.328 | 9.91 | 1.23 | 0.572 | -- | -- | -- | -0.0166 | 4.07 | -- | -- | -- | -- |
| 27.64 | 0.245 | 9.86 | 1.58 | -- | -1.65 | -- | -- | 0.215 | -- | 12.46 | 121 | -- | -- |
| 81.99 | 0.424 | 9.91 | -- | 0.403 | -0.817 | -- | -- | -0.0567 | 5.02 | 9.115 | 12 | -- | -- |
| 66.81 | 0.382 | 9.91 | 1.26 | -- | -- | -- | -- | -0.00134 | -- | -- | -- | -- | -- |
| 89.08 | 0.441 | 9.94 | -- | 0.596 | -- | -- | -- | -0.154 | 4.04 | -- | -- | -- | -- |
| 84.5 | 0.428 | 9.92 | -- | -- | -0.937 | -- | -- | -0.0565 | -- | 24.1 | 98 | -- | -- |
| 108.44 | 0.486 | 9.94 | -- | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.10 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 5 | 24.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 6 | 24.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 7 | 24.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 9 | 24.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 11 | 24.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 13 | 24.56 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 20 | 24.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 21 | 24.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 27 | 24.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 35 | 25.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 43 | 25.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 44 | 25.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 56 | 25.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 58 | 25.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 59 | 25.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 63 | 25.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 77 | 26.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 108 | 26.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 117 | 26.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 124 | 26.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 130 | 26.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 135 | 26.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 138 | 26.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 143 | 26.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 144 | 26.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 170 | 26.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 192 | 27.06 | temperature | 15 | 720 | > th | dose dependent | sin | 1 | NA |
| 226 | 27.23 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 242 | 27.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 284 | 27.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 539 | 28.33 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 606 | 28.52 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 639 | 28.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 642 | 28.63 | temperature | 15 | 10 | > th | dose dependent | sin | 21 | NA |
| 833 | 29.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 895 | 29.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |