Os03g0821700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0821700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.63 | 0.406 | 6.98 | 0.678 | 1.65 | 0.563 | 0.935 | -0.702 | -0.153 | 19.5 | 22.53 | 394 | -- | -- |
| 75.42 | 0.404 | 6.98 | 0.678 | 1.65 | 0.575 | 0.907 | -- | -0.156 | 19.5 | 22.57 | 396 | -- | -- |
| 76.94 | 0.409 | 6.97 | 0.683 | 1.64 | 0.572 | -- | -0.48 | -0.133 | 19.4 | 23.97 | 423 | -- | -- |
| 77.06 | 0.409 | 6.97 | 0.717 | 1.67 | 0.493 | -- | -- | -0.126 | 19.3 | 29.23 | 453 | -- | -- |
| 108.04 | 0.484 | 6.82 | 0.25 | -- | 2.09 | -- | 0.0425 | -0.106 | -- | 0.82 | 884 | -- | -- |
| 80.12 | 0.42 | 6.96 | 0.753 | 1.86 | -- | 0.877 | -- | -0.08 | 19 | -- | -- | -- | -- |
| 82.1 | 0.424 | 6.96 | 0.738 | 1.86 | -- | -- | -- | -0.0775 | 18.9 | -- | -- | -- | -- |
| 96.55 | 0.458 | 6.93 | 0.577 | -- | 2.45 | -- | -- | -0.189 | -- | 1.56 | 864 | -- | -- |
| 88.82 | 0.439 | 6.98 | -- | 1.61 | 0.57 | -- | -- | -0.18 | 19.4 | 30.3 | 461 | -- | -- |
| 263.78 | 0.759 | 6.92 | 0.698 | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
| 96.44 | 0.459 | 6.98 | -- | 1.85 | -- | -- | -- | -0.16 | 18.9 | -- | -- | -- | -- |
| 102.98 | 0.473 | 6.94 | -- | -- | 2.45 | -- | -- | -0.24 | -- | 0.6894 | 868 | -- | -- |
| 276.65 | 0.776 | 6.94 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.90 | temperature | 25.0 | 270 | > th | dose independent | rect. | 19 | 14 |
| 2 | 66.18 | temperature | 25.0 | 270 | > th | dose independent | sin | 10 | NA |
| 11 | 67.28 | temperature | 25.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 14 | 67.59 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 15 | 67.60 | temperature | 25.0 | 270 | < th | dose independent | rect. | 20 | 10 |
| 19 | 67.80 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 30 | 68.15 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 55 | 68.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 2 |
| 59 | 69.03 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 64 | 69.09 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 73 | 69.19 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 2 |
| 81 | 69.34 | temperature | 20.0 | 30 | > th | dose independent | rect. | 19 | 8 |
| 82 | 69.34 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 97 | 69.68 | temperature | 25.0 | 270 | < th | dose independent | sin | 10 | NA |
| 112 | 69.98 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 134 | 70.17 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 149 | 70.34 | temperature | 25.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 160 | 70.45 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 17 | 10 |
| 180 | 70.60 | temperature | 20.0 | 30 | > th | dose independent | rect. | 7 | 20 |
| 185 | 70.64 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 193 | 70.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 202 | 70.79 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 203 | 70.79 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 206 | 70.79 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 210 | 70.79 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 219 | 70.79 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 220 | 70.79 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 240 | 70.79 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 243 | 70.79 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 259 | 70.84 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 263 | 70.86 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 265 | 70.87 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 269 | 70.91 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 271 | 70.91 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 9 | 18 |
| 289 | 71.00 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 291 | 71.02 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 296 | 71.03 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 303 | 71.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 305 | 71.05 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 307 | 71.05 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 311 | 71.05 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 313 | 71.05 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 318 | 71.05 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 320 | 71.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 321 | 71.05 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 326 | 71.05 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 344 | 71.20 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 350 | 71.23 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 353 | 71.26 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 368 | 71.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 385 | 71.43 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 405 | 71.51 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 408 | 71.52 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 18 |
| 416 | 71.56 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 422 | 71.59 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 11 |
| 449 | 71.70 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 451 | 71.70 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 479 | 71.73 | radiation | 10.0 | 30 | < th | dose independent | rect. | 8 | 19 |
| 501 | 71.79 | temperature | 20.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 503 | 71.79 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 536 | 71.92 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 548 | 72.02 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 584 | 72.14 | temperature | 25.0 | 90 | > th | dose independent | rect. | 12 | 7 |
| 595 | 72.15 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 599 | 72.17 | radiation | 1.0 | 90 | < th | dose independent | rect. | 16 | 11 |
| 617 | 72.22 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 627 | 72.26 | humidity | 70.0 | 30 | > th | dose independent | rect. | 17 | 10 |
| 635 | 72.28 | humidity | 70.0 | 30 | > th | dose independent | rect. | 19 | 8 |
| 675 | 72.39 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 684 | 72.40 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 687 | 72.40 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 691 | 72.40 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 697 | 72.40 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 698 | 72.40 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 718 | 72.40 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 16 |
| 729 | 72.41 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 22 |
| 778 | 72.54 | wind | 7.0 | 30 | < th | dose independent | rect. | 3 | 16 |
| 787 | 72.56 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 16 |
| 803 | 72.62 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 12 | 9 |
| 830 | 72.70 | humidity | 70.0 | 30 | > th | dose independent | rect. | 14 | 13 |
| 833 | 72.70 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 12 | 7 |
| 853 | 72.76 | radiation | 20.0 | 270 | > th | dose independent | sin | 17 | NA |
| 858 | 72.77 | radiation | 20.0 | 270 | < th | dose independent | sin | 16 | NA |
| 859 | 72.77 | wind | 7.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 868 | 72.80 | wind | 7.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 879 | 72.83 | radiation | 20.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 891 | 72.85 | radiation | 20.0 | 270 | > th | dose independent | rect. | 11 | 6 |
| 906 | 72.85 | radiation | 40.0 | 270 | < th | dose dependent | sin | 17 | NA |