Os03g0820700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Gag polyprotein (Gag protein).
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Os03g0820700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Gag polyprotein (Gag protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.45 | 0.28 | 9.03 | 0.931 | 0.463 | 1.1 | 0.281 | -1.07 | 0.116 | 14.3 | 29.46 | 285 | -- | -- |
| 36.44 | 0.281 | 9.04 | 0.779 | 0.44 | 1.17 | 0.526 | -- | 0.11 | 14.4 | 27.67 | 315 | -- | -- |
| 35.71 | 0.278 | 9.03 | 0.951 | 0.461 | 1.09 | -- | -1.18 | 0.118 | 14.3 | 29.5 | 285 | -- | -- |
| 37.17 | 0.284 | 9.05 | 0.775 | 0.429 | 1.12 | -- | -- | 0.0935 | 14.1 | 27.43 | 297 | -- | -- |
| 38.16 | 0.288 | 9.03 | 1 | -- | 1.07 | -- | -1.29 | 0.0929 | -- | 31.4 | 916 | -- | -- |
| 53.37 | 0.342 | 9.1 | 0.457 | 0.272 | -- | 0.334 | -- | -0.16 | 11.6 | -- | -- | -- | -- |
| 53.84 | 0.344 | 9.1 | 0.47 | 0.271 | -- | -- | -- | -0.159 | 11.4 | -- | -- | -- | -- |
| 38.67 | 0.29 | 9.05 | 0.782 | -- | 1.1 | -- | -- | 0.0829 | -- | 26.7 | 844 | -- | -- |
| 50.27 | 0.33 | 9.09 | -- | 0.302 | 0.758 | -- | -- | -0.0693 | 12.8 | 25.43 | 309 | -- | -- |
| 58.45 | 0.357 | 9.11 | 0.463 | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
| 59.66 | 0.361 | 9.11 | -- | 0.266 | -- | -- | -- | -0.212 | 11.3 | -- | -- | -- | -- |
| 52.85 | 0.339 | 9.09 | -- | -- | 0.773 | -- | -- | -0.0657 | -- | 26.46 | 792 | -- | -- |
| 64.1 | 0.374 | 9.12 | -- | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 33.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 4 | 33.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 6 | 33.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 10 | 33.52 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 11 | 33.62 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 14 | 34.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 17 | 34.42 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 21 | 34.54 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 27 | 35.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 29 | 35.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 31 | 35.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 39 | 35.18 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 42 | 35.22 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 51 | 35.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 63 | 35.51 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 93 | 35.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 115 | 35.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 124 | 35.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 134 | 35.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 140 | 36.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 151 | 36.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 195 | 36.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 207 | 36.14 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 210 | 36.15 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 238 | 36.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 262 | 36.24 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 263 | 36.24 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 280 | 36.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 301 | 36.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 304 | 36.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 327 | 36.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 340 | 36.32 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 383 | 36.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 385 | 36.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 448 | 36.41 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 471 | 36.42 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 582 | 36.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 621 | 36.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 685 | 36.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 707 | 36.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 742 | 36.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 906 | 36.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 8 |
| 917 | 36.69 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 918 | 36.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 4 |