Os03g0818200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os03g0818200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 250.52 | 0.744 | 9.87 | -3.24 | 1.27 | 2.28 | -0.162 | -0.453 | -1.58 | 0.941 | 25 | 1128 | -- | -- |
| 250.52 | 0.737 | 9.86 | -3.14 | 1.26 | 2.24 | -0.187 | -- | -1.56 | 0.969 | 24.9 | 1120 | -- | -- |
| 250.55 | 0.737 | 9.88 | -3.25 | 1.26 | 2.29 | -- | -0.544 | -1.6 | 0.978 | 24.9 | 1120 | -- | -- |
| 250.67 | 0.737 | 9.86 | -3.13 | 1.26 | 2.25 | -- | -- | -1.56 | 0.995 | 24.9 | 1114 | -- | -- |
| 334.18 | 0.851 | 9.87 | -3.32 | -- | 2.94 | -- | -0.466 | -1.66 | -- | 24.37 | 1037 | -- | -- |
| 408.13 | 0.947 | 9.81 | -2.46 | 1.74 | -- | 0.28 | -- | -1.32 | 0.743 | -- | -- | -- | -- |
| 408.47 | 0.946 | 9.81 | -2.48 | 1.74 | -- | -- | -- | -1.32 | 0.741 | -- | -- | -- | -- |
| 334.78 | 0.852 | 9.86 | -3.24 | -- | 2.9 | -- | -- | -1.65 | -- | 24.35 | 1036 | -- | -- |
| 490.56 | 1.03 | 9.77 | -- | 1.38 | 1.76 | -- | -- | -1.13 | 1.62 | 25.3 | 953 | -- | -- |
| 598.26 | 1.14 | 9.78 | -2.41 | -- | -- | -- | -- | -1.29 | -- | -- | -- | -- | -- |
| 569.93 | 1.12 | 9.75 | -- | 1.7 | -- | -- | -- | -1.05 | 0.674 | -- | -- | -- | -- |
| 592.31 | 1.13 | 9.76 | -- | -- | 2.18 | -- | -- | -1.19 | -- | 24.7 | 1017 | -- | -- |
| 751.75 | 1.28 | 9.72 | -- | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 250.71 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 3 | 251.10 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 7 | 251.34 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 29 | 252.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 43 | 252.80 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 62 | 253.00 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 72 | 253.10 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 110 | 253.69 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 158 | 254.18 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 165 | 254.23 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 17 |
| 204 | 254.48 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 230 | 254.81 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 251 | 254.97 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 260 | 255.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 261 | 255.05 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 262 | 255.05 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 293 | 255.20 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 307 | 255.27 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 332 | 255.58 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 335 | 255.60 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 343 | 255.63 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 360 | 255.78 | temperature | 30.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 381 | 256.03 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 385 | 256.04 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 386 | 256.04 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 24 | 17 |
| 393 | 256.05 | temperature | 30.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 397 | 256.07 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 412 | 256.08 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 415 | 256.09 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 417 | 256.09 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 420 | 256.10 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 467 | 256.15 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 469 | 256.16 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 19 |
| 472 | 256.17 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 491 | 256.17 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 495 | 256.18 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 571 | 256.25 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 663 | 256.26 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 681 | 256.30 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 683 | 256.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 687 | 256.33 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 690 | 256.35 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 705 | 256.37 | temperature | 30.0 | 14400 | < th | dose independent | sin | 1 | NA |
| 725 | 256.39 | temperature | 30.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 750 | 256.46 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 763 | 256.50 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 767 | 256.51 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 791 | 256.57 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 808 | 256.60 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 809 | 256.60 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 18 | NA |
| 835 | 256.64 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 837 | 256.65 | temperature | 30.0 | 14400 | > th | dose dependent | no | NA | NA |
| 838 | 256.65 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 10 | 9 |
| 840 | 256.65 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 972 | 256.71 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |