Os03g0817800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0817800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263.38 | 0.763 | 6.64 | -1.54 | 0.86 | 1.22 | 2.04 | -3.87 | 0.0112 | 8.03 | 10.12 | 1448 | 11 | 0.969 |
| 295.29 | 0.8 | 6.64 | -1.3 | 0.861 | 1.14 | 1.95 | -- | 0.0101 | 7.94 | 10 | 1444 | 11.1 | 0.9 |
| 275.06 | 0.772 | 6.64 | -1.48 | 0.852 | 1.24 | -- | -3.8 | 0.01 | 8.33 | 10.13 | 1447 | 11.1 | 0.933 |
| 305.29 | 0.814 | 6.63 | -1.25 | 0.868 | 1.12 | -- | -- | 0.0174 | 8.2 | 10 | 1444 | 11.1 | 0.884 |
| 313.87 | 0.825 | 6.64 | -1.45 | -- | 1.4 | -- | -3.94 | 0.053 | -- | 10.16 | 1450 | 11.1 | 0.901 |
| 317.46 | 0.835 | 6.58 | -1.17 | 0.884 | -- | 1.9 | -- | 0.217 | 8.07 | -- | -- | -- | -- |
| 327.88 | 0.848 | 6.58 | -1.11 | 0.879 | -- | -- | -- | 0.218 | 8.45 | -- | -- | -- | -- |
| 342.8 | 0.862 | 6.64 | -1.2 | -- | 1.36 | -- | -- | 0.131 | -- | 10 | 1473 | 11.1 | 0.867 |
| 345.74 | 0.866 | 6.62 | -- | 0.865 | 1.08 | -- | -- | 0.0337 | 8.67 | 10.04 | 1443 | 11.3 | 0.95 |
| 371.01 | 0.9 | 6.6 | -1.11 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 360.65 | 0.888 | 6.55 | -- | 0.874 | -- | -- | -- | 0.342 | 8.55 | -- | -- | -- | -- |
| 379.57 | 0.907 | 6.64 | -- | -- | 1.34 | -- | -- | 0.272 | -- | 10.11 | 1480 | 11.1 | 0.817 |
| 403.56 | 0.938 | 6.57 | -- | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 266.27 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 2 | 269.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 3 | 270.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 7 | 270.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 23 | 271.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 29 | 271.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 49 | 272.37 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 53 | 272.39 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 106 | 273.93 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 115 | 274.22 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 13 |
| 119 | 274.32 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 150 | 275.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 151 | 275.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 163 | 275.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 164 | 275.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 166 | 275.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 168 | 275.73 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 195 | 276.16 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 199 | 276.18 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 203 | 276.24 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 204 | 276.25 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 2 |
| 208 | 276.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 215 | 276.36 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 4 |
| 236 | 276.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 265 | 277.06 | humidity | 70 | 1440 | > th | dose dependent | sin | 2 | NA |
| 278 | 277.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 282 | 277.31 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 298 | 277.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 306 | 277.71 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 336 | 278.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 352 | 278.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 354 | 278.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 356 | 278.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 368 | 278.36 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 402 | 278.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 525 | 279.31 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 534 | 279.36 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 691 | 280.42 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 702 | 280.61 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 708 | 280.68 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 732 | 280.88 | humidity | 80 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 734 | 280.89 | humidity | 70 | 720 | > th | dose dependent | sin | 15 | NA |
| 876 | 281.58 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 975 | 282.04 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |