Os03g0816600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0816600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.04 | 0.691 | 5.42 | 1.63 | 3.17 | -1.42 | 0.931 | -1.23 | -0.134 | 19.4 | 39.21 | 347 | -- | -- |
| 216.87 | 0.686 | 5.43 | 1.55 | 3.15 | -1.46 | 0.953 | -- | -0.158 | 19.4 | 40.46 | 368 | -- | -- |
| 218.13 | 0.688 | 5.41 | 1.6 | 3.13 | -1.4 | -- | -1.24 | -0.119 | 19.4 | 39.24 | 369 | -- | -- |
| 219.13 | 0.689 | 5.42 | 1.5 | 3.14 | -1.4 | -- | -- | -0.151 | 19.4 | 40.02 | 379 | -- | -- |
| 510.94 | 1.05 | 5.44 | 1.6 | -- | -2.74 | -- | -0.488 | -0.635 | -- | 38.08 | 736 | -- | -- |
| 242.29 | 0.73 | 5.39 | 1.6 | 3.49 | -- | 1.1 | -- | -0.0235 | 18.9 | -- | -- | -- | -- |
| 245.42 | 0.734 | 5.39 | 1.58 | 3.49 | -- | -- | -- | -0.0205 | 18.9 | -- | -- | -- | -- |
| 336.24 | 0.854 | 5.32 | 2.4 | -- | -4.42 | -- | -- | 0.153 | -- | 1.56 | 819 | -- | -- |
| 277.85 | 0.776 | 5.45 | -- | 3 | -1.53 | -- | -- | -0.246 | 19.6 | 40 | 411 | -- | -- |
| 884.66 | 1.39 | 5.32 | 1.51 | -- | -- | -- | -- | -0.0862 | -- | -- | -- | -- | -- |
| 311.52 | 0.826 | 5.43 | -- | 3.47 | -- | -- | -- | -0.197 | 18.9 | -- | -- | -- | -- |
| 334.3 | 0.852 | 5.34 | -- | -- | -4.44 | -- | -- | -0.286 | -- | 0.69 | 854 | -- | -- |
| 944.8 | 1.43 | 5.36 | -- | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 210.20 | temperature | 15 | 4320 | > th | dose independent | rect. | 8 | 5 |
| 3 | 211.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 10 | 213.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 5 |
| 11 | 213.44 | radiation | 40 | 270 | < th | dose independent | rect. | 7 | 15 |
| 22 | 214.26 | radiation | 40 | 270 | < th | dose independent | rect. | 4 | 23 |
| 23 | 214.33 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 3 | 6 |
| 24 | 214.52 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 2 | 7 |
| 53 | 215.68 | humidity | 90 | 10 | > th | dose independent | rect. | 3 | 7 |
| 59 | 215.89 | radiation | 40 | 270 | < th | dose independent | rect. | 15 | 22 |
| 62 | 216.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 8 | 14 |
| 63 | 216.06 | temperature | 15 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 65 | 216.12 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 68 | 216.15 | temperature | 15 | 4320 | < th | dose dependent | rect. | 5 | 13 |
| 78 | 216.54 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 81 | 216.66 | radiation | 1 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 94 | 216.68 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 7 |
| 107 | 216.85 | temperature | 20 | 30 | > th | dose independent | rect. | 19 | 17 |
| 111 | 216.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 114 | 216.94 | radiation | 40 | 270 | < th | dose independent | rect. | 4 | 8 |
| 123 | 217.04 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 128 | 217.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 135 | 217.16 | temperature | 15 | 4320 | < th | dose dependent | rect. | 5 | 10 |
| 136 | 217.18 | temperature | 15 | 4320 | < th | dose dependent | rect. | 6 | 7 |
| 142 | 217.26 | temperature | 15 | 4320 | < th | dose dependent | sin | 0 | NA |
| 196 | 217.79 | radiation | 40 | 270 | < th | dose independent | sin | 21 | NA |
| 240 | 218.06 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 7 |
| 244 | 218.07 | radiation | 1 | 270 | > th | dose dependent | sin | 20 | NA |
| 260 | 218.18 | wind | 9 | 270 | < th | dose dependent | rect. | 10 | 7 |
| 301 | 218.53 | temperature | 15 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 303 | 218.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 316 | 218.64 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 17 |
| 334 | 218.69 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 3 | 1 |
| 343 | 218.73 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 16 | 8 |
| 348 | 218.74 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 349 | 218.75 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 350 | 218.77 | radiation | 20 | 270 | > th | dose independent | rect. | 10 | 7 |
| 388 | 218.83 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 393 | 218.85 | temperature | 25 | 30 | > th | dose dependent | rect. | 10 | 21 |
| 455 | 219.10 | wind | 7 | 270 | < th | dose independent | rect. | 9 | 22 |
| 472 | 219.19 | wind | 9 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 495 | 219.31 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 7 |
| 512 | 219.31 | radiation | 40 | 270 | < th | dose dependent | sin | 20 | NA |
| 517 | 219.33 | wind | 7 | 90 | < th | dose independent | rect. | 12 | 7 |
| 518 | 219.33 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 540 | 219.43 | wind | 7 | 270 | < th | dose independent | rect. | 10 | 7 |
| 556 | 219.44 | radiation | 40 | 270 | > th | dose independent | sin | 21 | NA |
| 612 | 219.68 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 23 |
| 627 | 219.76 | radiation | 40 | 270 | < th | dose independent | no | NA | NA |
| 673 | 219.88 | radiation | 40 | 270 | > th | dose independent | no | NA | NA |
| 852 | 219.97 | radiation | 40 | 90 | < th | dose independent | rect. | 7 | 6 |
| 854 | 219.98 | temperature | 15 | 4320 | < th | dose independent | rect. | 5 | 6 |
| 857 | 220.00 | temperature | 15 | 4320 | < th | dose independent | rect. | 5 | 8 |
| 873 | 220.05 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 909 | 220.19 | temperature | 15 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 931 | 220.26 | temperature | 15 | 270 | > th | dose independent | rect. | 15 | 10 |