Os03g0815900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-directed RNA polymerase.
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Os03g0815900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-directed RNA polymerase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.59 | 0.26 | 12.8 | 1.27 | 1.01 | -0.974 | 0.995 | -1.86 | 0.665 | 2.77 | 24.94 | 76 | -- | -- |
| 34.8 | 0.277 | 12.8 | 1 | 0.989 | -0.793 | 0.373 | -- | 0.612 | 2.72 | 24.94 | 76 | -- | -- |
| 33.25 | 0.271 | 12.8 | 1.15 | 1.01 | -0.88 | -- | -1.07 | 0.641 | 2.7 | 24.94 | 76 | -- | -- |
| 35.26 | 0.278 | 12.8 | 0.994 | 1 | -0.791 | -- | -- | 0.604 | 2.73 | 25.2 | 66 | -- | -- |
| 66.79 | 0.381 | 12.8 | 1.31 | -- | -0.983 | -- | -1.86 | 0.653 | -- | 27 | 2561 | -- | -- |
| 44.19 | 0.312 | 12.8 | 1.19 | 0.844 | -- | 0.375 | -- | 0.765 | 2.98 | -- | -- | -- | -- |
| 44.66 | 0.313 | 12.8 | 1.18 | 0.846 | -- | -- | -- | 0.763 | 2.98 | -- | -- | -- | -- |
| 70.37 | 0.391 | 12.8 | 0.877 | -- | -0.861 | -- | -- | 0.607 | -- | 50.89 | 2567 | -- | -- |
| 58.62 | 0.357 | 12.9 | -- | 1.07 | -1.21 | -- | -- | 0.439 | 3.23 | 25.7 | 210 | -- | -- |
| 85.73 | 0.433 | 12.8 | 1.21 | -- | -- | -- | -- | 0.785 | -- | -- | -- | -- | -- |
| 81.25 | 0.422 | 12.8 | -- | 0.869 | -- | -- | -- | 0.632 | 2.99 | -- | -- | -- | -- |
| 79.53 | 0.415 | 12.9 | -- | -- | -1.08 | -- | -- | 0.336 | -- | 27.01 | 47520 | -- | -- |
| 124.62 | 0.521 | 12.8 | -- | -- | -- | -- | -- | 0.65 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.03 | temperature | 25 | 720 | < th | dose independent | sin | 14 | NA |
| 3 | 28.04 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 10 |
| 5 | 28.13 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 10 |
| 6 | 28.14 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 16 |
| 33 | 28.48 | temperature | 20 | 270 | > th | dose dependent | sin | 12 | NA |
| 39 | 28.59 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 43 | 28.64 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 77 | 29.03 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 83 | 29.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 158 | 29.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 296 | 29.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 301 | 29.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 365 | 30.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 366 | 30.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 413 | 30.10 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 479 | 30.21 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 18 |
| 487 | 30.23 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 16 |
| 540 | 30.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 589 | 30.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 596 | 30.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 597 | 30.50 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 598 | 30.51 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 635 | 30.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 667 | 30.62 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 676 | 30.63 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 704 | 30.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 718 | 30.68 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 720 | 30.69 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 758 | 30.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |