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Os03g0815300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.08 (0.0375) R2 : 0.642
β1 : 2.8 (0.141) R2dD : 0.341 R2D : 0.106
β2 : 1.44 (0.0953) R2dC : 0.182 R2C : 0.136
β3 : 1.26 (0.104) R2dE : 0.123 R2E : -0.0503
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.21 (0.0802) R2dN8 : 0.238 R2N8 : 0.0903
σ : 0.7
deviance : 226.11
__
_____
C
peak time of C : 3.97
E
wheather : temperature
threshold : 29.44
memory length : 1507
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.49 0.704 6.16 2.15 1.47 0.975 0.092 2.54 1.06 3.98 29.5 1494 -- --
226.54 0.701 6.08 2.8 1.46 1.25 -0.105 -- 1.2 4.17 29.41 1502 -- --
224.51 0.698 6.16 2.15 1.48 0.974 -- 2.54 1.06 3.98 29.5 1493 -- --
226.11 0.7 6.08 2.8 1.44 1.26 -- -- 1.21 3.97 29.44 1507 -- --
287.14 0.789 6.12 2.28 -- 1.33 -- 2.86 1.22 -- 28.36 332 -- --
299.43 0.811 6.1 2.4 1.41 -- -0.156 -- 1.13 4.09 -- -- -- --
299.5 0.81 6.1 2.4 1.41 -- -- -- 1.13 4.08 -- -- -- --
279.36 0.778 6.03 2.81 -- 1.37 -- -- 1.54 -- 26.3 306 -- --
425.6 0.961 6.16 -- 1.45 0.929 -- -- 0.96 3.43 29 1049 -- --
407.29 0.943 6.1 2.46 -- -- -- -- 1.17 -- -- -- -- --
451.75 0.994 6.16 -- 1.45 -- -- -- 0.865 4.06 -- -- -- --
479.86 1.02 6.12 -- -- 1.11 -- -- 1.11 -- 26.69 289 -- --
566.99 1.11 6.17 -- -- -- -- -- 0.897 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 210.53 precipitation 0.1 43200 > th dose dependent rect. 16 2
2 212.68 precipitation 0.1 14400 > th dose dependent rect. 17 10
3 213.03 precipitation 0.1 14400 > th dose dependent rect. 20 22
6 214.56 precipitation 0.1 14400 > th dose dependent rect. 17 4
17 215.94 precipitation 0.1 14400 < th dose independent rect. 17 2
18 215.94 precipitation 0.1 14400 < th dose dependent rect. 17 2
19 216.01 precipitation 0.1 14400 > th dose dependent rect. 8 10
20 216.10 precipitation 0.1 14400 > th dose dependent rect. 6 12
21 216.11 precipitation 0.1 14400 > th dose independent rect. 17 2
24 216.32 wind 9.0 14400 > th dose dependent rect. 18 17
47 217.14 wind 9.0 14400 < th dose independent rect. 18 17
62 218.08 wind 9.0 14400 < th dose independent rect. 20 15
69 218.31 wind 5.0 14400 > th dose independent rect. 6 3
71 218.41 wind 9.0 14400 > th dose independent rect. 18 17
73 218.45 precipitation 0.1 14400 > th dose dependent rect. 8 19
76 218.52 precipitation 0.1 14400 > th dose dependent rect. 10 17
89 218.80 precipitation 0.1 14400 > th dose dependent rect. 6 21
92 218.89 precipitation 0.1 14400 > th dose dependent sin 17 NA
98 219.07 precipitation 0.1 14400 > th dose independent rect. 17 5
100 219.16 precipitation 0.1 14400 < th dose independent rect. 17 5
101 219.16 precipitation 0.1 14400 < th dose dependent rect. 17 5
105 219.27 precipitation 0.1 14400 > th dose dependent rect. 8 15
107 219.32 wind 5.0 14400 < th dose independent rect. 6 3
119 219.44 precipitation 0.1 14400 > th dose dependent rect. 10 13
121 219.47 wind 5.0 14400 < th dose independent rect. 5 5
125 219.52 precipitation 0.1 14400 > th dose dependent rect. 6 17
160 219.93 wind 9.0 14400 > th dose independent rect. 20 15
164 219.99 wind 9.0 14400 > th dose dependent rect. 20 15
177 220.43 precipitation 0.1 14400 > th dose dependent rect. 2 16
181 220.56 wind 5.0 14400 > th dose dependent rect. 6 3
185 220.71 temperature 20.0 14400 < th dose independent rect. 21 1
206 221.18 wind 9.0 43200 < th dose independent rect. 17 22
207 221.30 wind 9.0 43200 > th dose independent rect. 17 22
214 221.60 temperature 20.0 14400 > th dose independent rect. 21 1
231 221.91 wind 9.0 43200 > th dose dependent sin 14 NA
235 221.94 wind 7.0 43200 > th dose dependent rect. 3 18
252 222.26 precipitation 0.1 14400 < th dose independent rect. 8 10
253 222.26 precipitation 0.1 14400 < th dose dependent rect. 8 10
256 222.29 precipitation 0.1 14400 > th dose independent rect. 8 10
263 222.39 atmosphere 1000.0 43200 > th dose independent rect. 22 1
266 222.42 wind 9.0 43200 > th dose dependent rect. 13 18
267 222.44 atmosphere 1000.0 43200 < th dose independent rect. 23 1
282 222.59 wind 9.0 43200 < th dose independent rect. 20 19
284 222.59 wind 7.0 43200 > th dose dependent rect. 17 23
339 223.13 temperature 25.0 1440 > th dose dependent rect. 9 1
368 223.33 precipitation 0.1 4320 > th dose independent rect. 12 6
377 223.40 wind 9.0 43200 < th dose independent rect. 13 22
381 223.42 precipitation 0.1 14400 > th dose independent rect. 6 12
389 223.47 precipitation 0.1 14400 < th dose independent rect. 6 12
390 223.47 precipitation 0.1 14400 < th dose dependent rect. 6 12
406 223.59 precipitation 0.1 14400 > th dose dependent rect. 2 21
425 223.71 wind 7.0 43200 > th dose dependent rect. 10 23
426 223.72 wind 9.0 43200 > th dose dependent rect. 13 12
439 223.75 wind 9.0 43200 > th dose dependent rect. 13 14
449 223.79 wind 7.0 43200 > th dose dependent rect. 13 23
454 223.83 wind 9.0 43200 > th dose independent rect. 20 19
455 223.83 wind 9.0 43200 < th dose independent rect. 13 20
469 223.91 radiation 10.0 43200 > th dose independent rect. 8 2
488 224.03 humidity 90.0 14400 > th dose dependent rect. 21 1
498 224.06 wind 9.0 43200 < th dose independent rect. 2 19
517 224.12 wind 7.0 43200 > th dose dependent no NA NA
579 224.40 humidity 90.0 14400 < th dose independent rect. 21 1
607 224.57 wind 5.0 14400 > th dose dependent rect. 5 5
610 224.60 precipitation 0.1 14400 > th dose dependent no NA NA
621 224.65 wind 9.0 43200 < th dose independent rect. 7 14
624 224.66 wind 1.0 43200 < th dose dependent rect. 8 1
630 224.71 precipitation 0.1 14400 > th dose independent rect. 8 14
632 224.74 precipitation 0.1 14400 < th dose independent rect. 8 14
633 224.74 precipitation 0.1 14400 < th dose dependent rect. 8 14
636 224.79 wind 9.0 43200 > th dose independent rect. 13 22
640 224.83 wind 9.0 43200 > th dose independent rect. 13 20
645 224.84 temperature 30.0 1440 < th dose independent rect. 11 5
647 224.85 wind 7.0 43200 > th dose dependent sin 21 NA
692 225.14 wind 9.0 43200 > th dose dependent rect. 13 8
698 225.19 wind 9.0 43200 > th dose independent rect. 2 19
721 225.29 precipitation 0.1 14400 > th dose independent rect. 6 16
722 225.29 wind 9.0 43200 > th dose independent rect. 24 21
726 225.34 temperature 30.0 1440 < th dose independent rect. 6 10
727 225.34 temperature 30.0 1440 < th dose independent rect. 4 12
728 225.34 temperature 30.0 1440 < th dose independent rect. 19 21
742 225.37 precipitation 0.1 14400 < th dose independent rect. 6 16
745 225.37 precipitation 0.1 14400 < th dose dependent rect. 6 16
758 225.45 precipitation 0.1 14400 > th dose independent rect. 10 12
761 225.48 precipitation 0.1 14400 < th dose independent rect. 10 12
764 225.48 precipitation 0.1 14400 < th dose dependent rect. 10 12
771 225.52 wind 9.0 43200 > th dose independent rect. 8 13
787 225.62 wind 9.0 43200 > th dose independent sin 14 NA
791 225.64 radiation 10.0 43200 > th dose independent rect. 8 5
801 225.68 precipitation 0.1 43200 > th dose dependent rect. 19 2
841 225.91 temperature 30.0 1440 < th dose independent rect. 13 3
843 225.91 wind 9.0 43200 < th dose independent rect. 10 23
847 225.94 humidity 80.0 43200 > th dose independent rect. 22 2
857 225.98 wind 9.0 43200 < th dose independent rect. 7 23
860 226.00 wind 7.0 43200 > th dose dependent rect. 5 11
880 226.04 wind 9.0 43200 < th dose independent rect. 20 23
884 226.06 wind 9.0 43200 < th dose independent no NA NA
892 226.08 radiation 30.0 1440 > th dose independent rect. 15 19
900 226.11 wind 7.0 43200 > th dose independent rect. 13 1
916 226.18 temperature 30.0 1440 > th dose independent rect. 11 5
945 226.31 temperature 30.0 1440 > th dose independent rect. 15 1
968 226.38 atmosphere 1000.0 43200 < th dose independent rect. 21 15
971 226.39 atmosphere 1000.0 43200 < th dose independent rect. 21 11
982 226.41 wind 9.0 43200 > th dose dependent rect. 20 1
984 226.42 temperature 30.0 1440 < th dose independent rect. 15 1