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Os03g0812500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0271) R2 : 0.937
β1 : -0.0671 (0.0995) R2dD : 8.84e-05 R2D : -0.00234
β2 : 3.25 (0.076) R2dC : 0.295 R2C : 0.541
β3 : 3.1 (0.0626) R2dE : 0.388 R2E : 0.63
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -1.96 (0.23) R2dD*E : 0.0105 R2D*E : 7.97e-05
γ1 : -0.175 (0.0579) R2dN8 : 0.0017 R2N8 : 0.00214
σ : 0.507
deviance : 118.56
__
_____
C
peak time of C : 17.5
E
wheather : radiation
threshold : 1.259
memory length : 242
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 20
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.98 0.499 11.6 -0.0708 3.13 3.15 1.75 -2.38 -0.181 17.5 1.26 257 20 --
136.65 0.544 11.6 -0.0909 3.13 3.19 0.724 -- -0.174 17.6 1.26 243 19.8 --
118.56 0.507 11.6 -0.0671 3.25 3.1 -- -1.96 -0.175 17.5 1.259 242 20 --
137.64 0.546 11.6 -0.132 3.14 3.07 -- -- -0.194 17.4 1.184 242 19.7 --
179.26 0.624 11.5 0.0116 -- 5.45 -- -1.09 -0.173 -- -4.653 379 17.9 --
179.26 0.628 11.6 0.00859 5.46 -- -1.08 -- -0.172 15.2 -- -- -- --
183.02 0.634 11.6 -0.0131 5.46 -- -- -- -0.178 15.2 -- -- -- --
183.02 0.63 11.5 -0.013 -- 5.45 -- -- -0.178 -- -4.335 384 18 --
138.1 0.547 11.6 -- 3.16 3.06 -- -- -0.181 17.4 1.19 242 19.7 --
1870.21 2.02 11.6 -0.245 -- -- -- -- -0.321 -- -- -- -- --
183.02 0.633 11.6 -- 5.46 -- -- -- -0.177 15.2 -- -- -- --
183.02 0.63 11.5 -- -- 5.45 -- -- -0.177 -- -5.064 389 18 --
1871.79 2.02 11.6 -- -- -- -- -- -0.294 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.19 radiation 20.0 270 < th dose dependent rect. 16 14
6 101.99 precipitation 0.1 270 < th dose independent rect. 21 13
7 101.99 precipitation 0.1 270 < th dose dependent rect. 21 13
11 104.11 wind 9.0 270 < th dose independent rect. 21 13
13 104.19 humidity 50.0 270 > th dose independent rect. 21 13
14 104.20 temperature 10.0 270 > th dose independent rect. 10 11
15 104.20 temperature 10.0 270 > th dose independent rect. 21 13
16 104.20 atmosphere 995.0 270 > th dose independent rect. 21 13
19 105.00 humidity 50.0 270 > th dose independent rect. 17 13
20 105.20 precipitation 0.1 270 < th dose independent rect. 6 11
21 105.20 precipitation 0.1 270 < th dose dependent rect. 6 11
22 106.01 temperature 10.0 270 > th dose independent rect. 6 11
23 106.01 atmosphere 1015.0 270 < th dose independent rect. 6 11
24 106.01 temperature 10.0 270 > th dose independent rect. 17 13
25 106.01 radiation 20.0 270 < th dose independent rect. 17 13
28 106.19 wind 1.0 270 > th dose independent rect. 10 11
29 106.25 atmosphere 1015.0 270 < th dose independent rect. 10 11
34 106.87 temperature 30.0 270 < th dose independent rect. 21 13
35 106.90 wind 9.0 270 < th dose independent rect. 17 13
36 106.96 wind 9.0 270 < th dose independent rect. 6 11
41 108.15 precipitation 0.1 270 < th dose independent rect. 10 11
42 108.15 precipitation 0.1 270 < th dose dependent rect. 10 11
48 108.95 atmosphere 995.0 270 > th dose independent rect. 17 13
49 108.99 wind 9.0 270 < th dose independent rect. 10 11
60 110.00 temperature 10.0 270 > th dose dependent rect. 2 4
65 111.29 atmosphere 995.0 270 > th dose independent rect. 6 11
74 112.99 temperature 30.0 270 < th dose independent rect. 17 13
78 113.29 temperature 10.0 270 > th dose dependent rect. 3 2
86 113.75 temperature 20.0 270 > th dose independent rect. 2 4
90 114.22 precipitation 0.1 270 < th dose independent rect. 17 13
91 114.22 precipitation 0.1 270 < th dose dependent rect. 17 13
94 114.48 atmosphere 995.0 270 > th dose independent rect. 10 11
104 115.12 radiation 1.0 270 > th dose independent sin 2 NA
105 115.23 radiation 10.0 270 < th dose independent rect. 2 4
106 115.29 temperature 20.0 270 > th dose independent rect. 3 2
112 115.76 humidity 80.0 270 > th dose independent rect. 2 4
113 115.76 radiation 10.0 270 < th dose dependent rect. 2 4
114 115.89 humidity 50.0 270 > th dose dependent rect. 2 4
117 116.18 wind 9.0 270 < th dose independent rect. 6 20
121 116.28 precipitation 0.1 270 < th dose independent rect. 6 20
122 116.28 precipitation 0.1 270 < th dose dependent rect. 6 20
125 116.37 radiation 1.0 270 < th dose independent rect. 1 20
127 116.55 atmosphere 1010.0 270 < th dose independent rect. 2 4
128 116.55 radiation 1.0 270 < th dose independent rect. 24 22
132 116.74 humidity 50.0 270 > th dose independent rect. 6 10
134 116.75 wind 9.0 270 < th dose independent rect. 2 4
135 116.75 temperature 10.0 270 > th dose independent rect. 2 4
137 116.75 temperature 30.0 270 < th dose independent rect. 2 4
138 116.75 humidity 50.0 270 > th dose independent rect. 2 4
141 116.75 atmosphere 995.0 270 > th dose independent rect. 2 4
146 116.75 temperature 10.0 270 > th dose independent rect. 6 20
147 116.83 humidity 80.0 270 > th dose independent rect. 3 2
153 117.26 wind 1.0 270 > th dose independent rect. 6 11
155 117.28 humidity 50.0 270 > th dose independent rect. 11 10
156 117.32 wind 9.0 270 < th dose independent rect. 5 22
158 117.40 humidity 50.0 270 > th dose dependent rect. 3 2
160 117.56 radiation 1.0 270 < th dose dependent rect. 1 20
161 117.57 radiation 1.0 270 > th dose independent rect. 6 11
166 117.74 radiation 1.0 270 < th dose independent rect. 3 2
169 117.77 radiation 10.0 270 < th dose dependent rect. 3 2
172 117.81 humidity 50.0 270 > th dose dependent rect. 16 14
177 117.87 wind 9.0 270 < th dose independent rect. 3 2
178 117.87 temperature 10.0 270 > th dose independent rect. 3 2
180 117.87 temperature 30.0 270 < th dose independent rect. 3 2
181 117.87 humidity 50.0 270 > th dose independent rect. 3 2
184 117.87 atmosphere 995.0 270 > th dose independent rect. 3 2
185 117.87 atmosphere 1010.0 270 < th dose independent rect. 3 2
190 117.87 temperature 10.0 270 > th dose independent rect. 5 22
197 118.16 radiation 1.0 270 < th dose dependent rect. 2 17
208 118.30 radiation 1.0 270 < th dose independent rect. 2 15
212 118.35 wind 1.0 270 > th dose independent rect. 21 13
222 118.58 precipitation 0.1 270 < th dose independent rect. 2 4
223 118.58 precipitation 0.1 270 < th dose dependent rect. 2 4
301 119.66 precipitation 0.1 270 < th dose independent rect. 15 11
302 119.66 precipitation 0.1 270 < th dose dependent rect. 15 11
310 119.87 radiation 1.0 720 < th dose independent rect. 19 10
311 119.89 humidity 60.0 720 > th dose independent rect. 19 10
316 119.93 radiation 10.0 720 < th dose dependent rect. 19 10
338 120.09 temperature 10.0 720 > th dose independent rect. 19 10
339 120.09 temperature 30.0 720 < th dose independent rect. 19 10
341 120.09 atmosphere 995.0 720 > th dose independent rect. 19 10
346 120.09 temperature 10.0 720 > th dose independent rect. 5 14
347 120.09 atmosphere 1015.0 720 < th dose independent rect. 5 14
370 120.75 wind 9.0 270 < th dose dependent rect. 2 4
392 121.15 precipitation 0.1 270 < th dose independent rect. 3 2
393 121.15 precipitation 0.1 270 < th dose dependent rect. 3 2
436 121.66 wind 9.0 720 < th dose independent rect. 19 10
440 121.72 wind 9.0 270 < th dose independent rect. 15 11
465 122.21 precipitation 0.1 720 < th dose independent rect. 5 14
466 122.21 precipitation 0.1 720 < th dose dependent rect. 5 14
476 122.36 wind 7.0 720 < th dose independent rect. 23 10
483 122.47 radiation 40.0 270 < th dose independent rect. 15 11
494 122.59 temperature 10.0 720 > th dose independent rect. 23 10
495 122.59 humidity 50.0 720 > th dose independent rect. 23 10
496 122.59 atmosphere 995.0 720 > th dose independent rect. 23 10
497 122.59 temperature 10.0 720 > th dose independent rect. 9 14
502 122.66 temperature 10.0 270 > th dose independent rect. 15 11
503 122.66 temperature 10.0 270 > th dose independent rect. 2 13
504 122.66 atmosphere 1015.0 270 < th dose independent rect. 2 13
521 122.97 wind 9.0 270 < th dose independent rect. 2 13
538 123.16 temperature 10.0 720 > th dose independent rect. 18 4
539 123.16 humidity 50.0 720 > th dose independent rect. 18 4
540 123.16 radiation 20.0 720 < th dose independent rect. 18 4
543 123.16 temperature 10.0 720 > th dose independent rect. 22 20
544 123.16 wind 9.0 270 < th dose dependent rect. 3 2
546 123.18 radiation 40.0 720 < th dose dependent rect. 18 4
565 123.40 atmosphere 995.0 270 > th dose independent rect. 2 13
572 123.49 atmosphere 1015.0 270 < th dose independent rect. 21 14
595 123.81 wind 1.0 270 > th dose independent rect. 2 3
627 124.01 temperature 10.0 720 > th dose independent rect. 6 4
628 124.01 atmosphere 995.0 720 > th dose independent rect. 6 4
629 124.01 atmosphere 1015.0 720 < th dose independent rect. 6 4
630 124.01 temperature 10.0 720 > th dose independent rect. 10 20
631 124.04 wind 9.0 720 < th dose independent rect. 6 4
633 124.05 wind 9.0 720 < th dose independent rect. 18 4
634 124.07 humidity 50.0 720 > th dose independent rect. 6 4
636 124.09 precipitation 0.1 720 < th dose independent rect. 23 10
638 124.09 precipitation 0.1 720 < th dose dependent rect. 23 10
645 124.14 wind 1.0 270 > th dose independent rect. 6 20
658 124.25 precipitation 0.1 720 < th dose independent rect. 22 20
659 124.25 precipitation 0.1 720 < th dose dependent rect. 22 20
663 124.30 precipitation 0.1 720 < th dose independent rect. 6 4
665 124.30 radiation 1.0 270 < th dose dependent sin 2 NA
666 124.30 precipitation 0.1 720 < th dose dependent rect. 6 4
667 124.32 atmosphere 995.0 270 > th dose independent rect. 6 20
672 124.46 temperature 30.0 720 < th dose independent rect. 23 10
680 124.51 radiation 1.0 270 > th dose independent rect. 16 23
705 124.81 temperature 10.0 10 > th dose dependent rect. 3 5
726 124.94 atmosphere 995.0 720 > th dose independent rect. 18 4
789 125.40 atmosphere 995.0 90 > th dose independent rect. 19 12
827 125.66 radiation 1.0 270 < th dose independent sin 2 NA
858 125.85 radiation 10.0 10 < th dose independent rect. 4 4
883 126.02 wind 7.0 720 < th dose independent rect. 22 4
908 126.08 radiation 40.0 720 < th dose independent rect. 23 10
912 126.10 radiation 40.0 270 < th dose independent rect. 21 13
962 126.30 wind 9.0 720 < th dose independent rect. 21 6
967 126.31 atmosphere 995.0 90 > th dose dependent rect. 3 4
980 126.45 precipitation 0.1 270 < th dose independent rect. 2 13
982 126.45 precipitation 0.1 270 < th dose dependent rect. 2 13