Os03g0812000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA topoisomerase, type IIA, subunit A or C-terminal domain containing protein.
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Os03g0812000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA topoisomerase, type IIA, subunit A or C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.86 | 0.544 | 10.7 | 2.02 | 4.01 | 2.82 | 0.204 | -0.0963 | 0.299 | 18.1 | 25.5 | 22 | 2.17 | -- |
| 133.83 | 0.539 | 10.7 | 2.01 | 4.02 | 2.82 | 0.193 | -- | 0.292 | 18.1 | 25.5 | 20 | 2.12 | -- |
| 133.82 | 0.539 | 10.7 | 2.04 | 4.02 | 2.78 | -- | -0.239 | 0.308 | 18.1 | 25.5 | 19 | 2.03 | -- |
| 133.93 | 0.539 | 10.7 | 2 | 4.02 | 2.81 | -- | -- | 0.299 | 18.1 | 25.5 | 19 | 2.08 | -- |
| 313.03 | 0.824 | 10.6 | 1.51 | -- | 4.54 | -- | 6.01 | -0.282 | -- | 50.77 | 250 | 13.4 | -- |
| 233.86 | 0.717 | 10.8 | 1.58 | 3.52 | -- | 0.48 | -- | -0.199 | 18.9 | -- | -- | -- | -- |
| 234.45 | 0.717 | 10.8 | 1.57 | 3.52 | -- | -- | -- | -0.198 | 18.9 | -- | -- | -- | -- |
| 229.1 | 0.705 | 10.7 | 1.69 | -- | 3.88 | -- | -- | -0.144 | -- | 102.9 | 301 | 13.6 | -- |
| 234.59 | 0.717 | 10.7 | -- | 3.97 | 2.44 | -- | -- | -0.0117 | 18.1 | 26.5 | 19 | 2.63 | -- |
| 884.15 | 1.39 | 10.7 | 1.49 | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
| 299.17 | 0.809 | 10.8 | -- | 3.5 | -- | -- | -- | -0.372 | 18.9 | -- | -- | -- | -- |
| 299.75 | 0.806 | 10.7 | -- | -- | 3.56 | -- | -- | -0.344 | -- | 259 | 187 | 12.6 | -- |
| 942.92 | 1.43 | 10.8 | -- | -- | -- | -- | -- | -0.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.86 | temperature | 25 | 30 | < th | dose dependent | sin | 8 | NA |
| 8 | 139.77 | temperature | 15 | 10 | > th | dose dependent | sin | 9 | NA |
| 14 | 142.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 16 | 142.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 12 |
| 18 | 142.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 27 | 143.18 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 17 |
| 35 | 143.90 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 15 |
| 40 | 144.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 71 | 145.69 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 14 |
| 81 | 146.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 86 | 146.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 12 |
| 89 | 147.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 112 | 148.38 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 12 |
| 119 | 148.64 | temperature | 20 | 30 | > th | dose independent | sin | 8 | NA |
| 122 | 148.79 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 20 |
| 141 | 149.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 186 | 151.18 | temperature | 20 | 30 | < th | dose independent | sin | 8 | NA |
| 188 | 151.32 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 22 |
| 280 | 153.34 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 12 |
| 293 | 153.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 314 | 154.25 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 13 |
| 411 | 156.37 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 17 |
| 423 | 156.59 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 438 | 156.87 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 21 |
| 539 | 158.42 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 18 |
| 611 | 159.21 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 618 | 159.32 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 734 | 160.05 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 742 | 160.09 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 759 | 160.22 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 765 | 160.30 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 23 |
| 770 | 160.34 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 775 | 160.41 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 836 | 160.91 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 869 | 161.24 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |