Os03g0811700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit).
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Os03g0811700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.55 | 0.242 | 12.2 | -0.239 | 0.333 | -0.273 | 0.305 | 0.631 | -0.0771 | 12.6 | 22.5 | 1991 | -- | -- |
| 27.41 | 0.244 | 12.2 | -0.0728 | 0.335 | -0.326 | 0.276 | -- | -0.025 | 12.6 | 21.5 | 2597 | -- | -- |
| 26.93 | 0.242 | 12.2 | -0.251 | 0.331 | -0.271 | -- | 0.688 | -0.0835 | 12.6 | 22.7 | 2041 | -- | -- |
| 27.82 | 0.246 | 12.2 | -0.0662 | 0.342 | -0.332 | -- | -- | -0.0208 | 12.8 | 21.3 | 2593 | -- | -- |
| 33.09 | 0.269 | 12.2 | -0.0163 | -- | -0.242 | -- | 0.051 | -0.0102 | -- | 22.7 | 2041 | -- | -- |
| 30.34 | 0.258 | 12.2 | 0.089 | 0.319 | -- | 0.336 | -- | 0.079 | 12.7 | -- | -- | -- | -- |
| 30.82 | 0.26 | 12.2 | 0.102 | 0.318 | -- | -- | -- | 0.0808 | 12.8 | -- | -- | -- | -- |
| 32.91 | 0.268 | 12.2 | 0.00287 | -- | -0.249 | -- | -- | -0.00469 | -- | 22.4 | 1674 | -- | -- |
| 27.94 | 0.246 | 12.2 | -- | 0.339 | -0.33 | -- | -- | -0.0188 | 12.8 | 21.34 | 2596 | -- | -- |
| 37.14 | 0.285 | 12.2 | 0.0902 | -- | -- | -- | -- | 0.075 | -- | -- | -- | -- | -- |
| 31.09 | 0.261 | 12.2 | -- | 0.316 | -- | -- | -- | 0.0694 | 12.7 | -- | -- | -- | -- |
| 32.91 | 0.268 | 12.2 | -- | -- | -0.25 | -- | -- | -0.00511 | -- | 22.4 | 1674 | -- | -- |
| 37.36 | 0.285 | 12.2 | -- | -- | -- | -- | -- | 0.065 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.58 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 5 | 25.67 | radiation | 30 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 8 | 25.70 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 18 | 25.78 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 24 | 25.82 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 30 | 25.86 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 32 | 25.87 | radiation | 10 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 38 | 25.88 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 129 | 25.96 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 187 | 25.97 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 277 | 26.00 | radiation | 40 | 43200 | > th | dose independent | sin | 23 | NA |
| 289 | 26.01 | radiation | 40 | 43200 | > th | dose independent | sin | 21 | NA |
| 331 | 26.03 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 543 | 26.06 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 568 | 26.08 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 951 | 26.14 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 957 | 26.14 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 7 |