Os03g0810500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0810500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.42 | 0.624 | 6.63 | -1.63 | 0.703 | 1.41 | -0.00114 | 2.65 | -0.657 | 3.2 | 9.973 | 273 | -- | -- |
| 179.78 | 0.624 | 6.68 | -2.05 | 0.559 | 1.39 | -0.656 | -- | -0.784 | 4.08 | -9.431 | 477 | -- | -- |
| 176.42 | 0.619 | 6.63 | -1.63 | 0.703 | 1.41 | -- | 2.65 | -0.657 | 3.2 | 9.968 | 272 | -- | -- |
| 180.98 | 0.627 | 6.68 | -2.04 | 0.632 | 1.45 | -- | -- | -0.77 | 3.68 | 4.662 | 390 | -- | -- |
| 183.77 | 0.631 | 6.64 | -1.72 | -- | 1.25 | -- | 1.68 | -0.673 | -- | 14.8 | 1044 | -- | -- |
| 203.31 | 0.668 | 6.64 | -1.74 | 0.35 | -- | -0.506 | -- | -0.562 | 1.92 | -- | -- | -- | -- |
| 204.09 | 0.669 | 6.64 | -1.72 | 0.35 | -- | -- | -- | -0.558 | 1.25 | -- | -- | -- | -- |
| 185.34 | 0.634 | 6.68 | -2.07 | -- | 1.14 | -- | -- | -0.767 | -- | 16.46 | 1022 | -- | -- |
| 276.96 | 0.775 | 6.59 | -- | 0.448 | 0.517 | -- | -- | -0.409 | 3.55 | 21.93 | 390 | -- | -- |
| 211.66 | 0.68 | 6.63 | -1.71 | -- | -- | -- | -- | -0.551 | -- | -- | -- | -- | -- |
| 282.39 | 0.786 | 6.6 | -- | 0.321 | -- | -- | -- | -0.366 | 1.04 | -- | -- | -- | -- |
| 276.81 | 0.775 | 6.59 | -- | -- | 0.77 | -- | -- | -0.294 | -- | 34.7 | 917 | -- | -- |
| 288.8 | 0.793 | 6.59 | -- | -- | -- | -- | -- | -0.361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.36 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 48 | 171.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 72 | 172.31 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 278 | 176.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 7 |
| 292 | 176.42 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 313 | 176.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 321 | 176.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 366 | 177.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 373 | 177.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 386 | 177.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 402 | 177.53 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 20 |
| 413 | 177.55 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 422 | 177.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 430 | 177.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 486 | 178.01 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 7 |
| 510 | 178.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 515 | 178.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 556 | 178.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 597 | 178.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 638 | 178.69 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 18 |
| 709 | 178.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 735 | 179.03 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 6 |
| 744 | 179.06 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 17 |
| 748 | 179.07 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 22 |
| 767 | 179.12 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 777 | 179.15 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 15 |
| 834 | 179.32 | wind | 1 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 852 | 179.37 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 897 | 179.45 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 15 |
| 996 | 179.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 2 |