Os03g0808600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase.
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Os03g0808600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.12 | 0.27 | 12.2 | 1.17 | 0.253 | 0.392 | -0.0234 | -1.22 | 0.559 | 21.4 | 0.001095 | 3507 | -- | -- |
| 34.06 | 0.272 | 12.2 | 1.19 | 0.253 | 0.308 | -0.0666 | -- | 0.598 | 20.9 | 1.589 | 4323 | -- | -- |
| 33.12 | 0.268 | 12.2 | 1.17 | 0.253 | 0.393 | -- | -1.22 | 0.559 | 21.4 | 0.005412 | 3506 | -- | -- |
| 33.96 | 0.271 | 12.2 | 1.18 | 0.245 | 0.309 | -- | -- | 0.608 | 21.4 | 1.554 | 4325 | -- | -- |
| 36.63 | 0.282 | 12.2 | 1.17 | -- | 0.365 | -- | -1.01 | 0.561 | -- | 0.1387 | 4304 | -- | -- |
| 35.45 | 0.279 | 12.2 | 1.28 | 0.236 | -- | 0.0284 | -- | 0.52 | 21.5 | -- | -- | -- | -- |
| 35.45 | 0.279 | 12.2 | 1.28 | 0.236 | -- | -- | -- | 0.52 | 21.5 | -- | -- | -- | -- |
| 37.47 | 0.285 | 12.2 | 1.18 | -- | 0.293 | -- | -- | 0.603 | -- | 1.54 | 4298 | -- | -- |
| 57.16 | 0.352 | 12.2 | -- | 0.33 | 1.13 | -- | -- | 0.373 | 22 | 9.044 | 13532 | -- | -- |
| 38.73 | 0.291 | 12.2 | 1.28 | -- | -- | -- | -- | 0.52 | -- | -- | -- | -- | -- |
| 78.43 | 0.414 | 12.2 | -- | 0.239 | -- | -- | -- | 0.378 | 21.9 | -- | -- | -- | -- |
| 48.87 | 0.326 | 12.2 | -- | -- | 1.25 | -- | -- | 0.21 | -- | 18.63 | 47379 | -- | -- |
| 81.86 | 0.422 | 12.2 | -- | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.66 | wind | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 2 | 29.79 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 5 | 29.81 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 6 | 29.82 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 7 | 29.87 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 17 | 30.76 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 48 | 31.04 | wind | 1 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 51 | 31.18 | wind | 1 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 66 | 31.47 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 108 | 31.92 | wind | 1 | 4320 | < th | dose dependent | rect. | 2 | 7 |
| 111 | 31.96 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 112 | 31.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 117 | 32.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 134 | 32.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 142 | 32.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 169 | 32.24 | wind | 1 | 1440 | < th | dose dependent | sin | 2 | NA |
| 172 | 32.25 | wind | 1 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 191 | 32.35 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 18 |
| 207 | 32.42 | wind | 1 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 213 | 32.43 | wind | 1 | 4320 | > th | dose independent | rect. | 23 | 10 |
| 226 | 32.47 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 237 | 32.51 | wind | 1 | 1440 | > th | dose independent | sin | 3 | NA |
| 243 | 32.52 | wind | 1 | 4320 | < th | dose independent | rect. | 23 | 10 |
| 280 | 32.60 | wind | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 295 | 32.65 | wind | 1 | 1440 | < th | dose independent | sin | 3 | NA |
| 312 | 32.68 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 392 | 32.80 | wind | 1 | 4320 | < th | dose dependent | sin | 6 | NA |
| 398 | 32.81 | wind | 1 | 4320 | > th | dose independent | sin | 7 | NA |
| 443 | 32.86 | wind | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 462 | 32.88 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 15 |
| 498 | 32.92 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 508 | 32.93 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 21 |
| 511 | 32.94 | wind | 1 | 4320 | < th | dose independent | sin | 7 | NA |
| 536 | 32.96 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 553 | 32.98 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 15 |
| 615 | 33.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 633 | 33.07 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 638 | 33.08 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 674 | 33.10 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 685 | 33.11 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 687 | 33.11 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 713 | 33.13 | wind | 1 | 43200 | > th | dose independent | sin | 14 | NA |
| 714 | 33.13 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 715 | 33.13 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 807 | 33.21 | wind | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 857 | 33.24 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 865 | 33.25 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 872 | 33.25 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 900 | 33.26 | wind | 1 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 901 | 33.26 | wind | 1 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 906 | 33.26 | wind | 1 | 4320 | < th | dose dependent | rect. | 14 | 19 |
| 922 | 33.27 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 928 | 33.27 | wind | 1 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 929 | 33.27 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 938 | 33.28 | wind | 1 | 720 | > th | dose independent | sin | 20 | NA |
| 942 | 33.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 983 | 33.30 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 989 | 33.30 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 995 | 33.30 | wind | 1 | 720 | < th | dose dependent | sin | 22 | NA |