Os03g0808100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cellulose synthase-5.
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Os03g0808100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cellulose synthase-5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.07 | 0.54 | 4.47 | -0.151 | 1.98 | -1.12 | 1.91 | -0.884 | 0.239 | 19.4 | 61.09 | 1764 | -- | -- |
| 133.28 | 0.538 | 4.47 | -0.173 | 1.97 | -1.18 | 1.98 | -- | 0.262 | 19.4 | 61.08 | 1781 | -- | -- |
| 141.05 | 0.553 | 4.45 | -0.184 | 1.99 | -1.13 | -- | -1.12 | 0.26 | 19.2 | 61.86 | 1817 | -- | -- |
| 143.35 | 0.558 | 4.47 | -0.213 | 1.97 | -1.18 | -- | -- | 0.261 | 19.2 | 62 | 1803 | -- | -- |
| 205.38 | 0.667 | 4.51 | -0.145 | -- | -2.38 | -- | -1.22 | -0.0996 | -- | 72.01 | 625 | -- | -- |
| 180.43 | 0.63 | 4.55 | 0.0243 | 2.07 | -- | 2.08 | -- | -0.064 | 19.4 | -- | -- | -- | -- |
| 191.76 | 0.648 | 4.55 | -0.019 | 2.08 | -- | -- | -- | -0.0581 | 19.2 | -- | -- | -- | -- |
| 209.71 | 0.674 | 4.52 | -0.262 | -- | -2.35 | -- | -- | -0.173 | -- | 72.64 | 613 | -- | -- |
| 144.61 | 0.56 | 4.47 | -- | 1.97 | -1.15 | -- | -- | 0.28 | 19.2 | 62 | 1802 | -- | -- |
| 421.8 | 0.96 | 4.5 | -0.0565 | -- | -- | -- | -- | -0.094 | -- | -- | -- | -- | -- |
| 191.77 | 0.648 | 4.55 | -- | 2.08 | -- | -- | -- | -0.056 | 19.2 | -- | -- | -- | -- |
| 211.5 | 0.677 | 4.51 | -- | -- | -2.33 | -- | -- | -0.144 | -- | 72.67 | 612 | -- | -- |
| 421.88 | 0.959 | 4.5 | -- | -- | -- | -- | -- | -0.0878 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.52 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 2 | 133.53 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 5 | 133.55 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 15 | 133.79 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 20 |
| 24 | 133.88 | humidity | 60 | 1440 | > th | dose independent | sin | 16 | NA |
| 34 | 134.10 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 50 | 134.28 | humidity | 70 | 1440 | < th | dose dependent | sin | 14 | NA |
| 61 | 134.40 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 15 |
| 74 | 134.59 | humidity | 60 | 1440 | < th | dose independent | sin | 16 | NA |
| 94 | 134.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 98 | 134.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 132 | 135.09 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 134 | 135.10 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 153 | 135.26 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 182 | 135.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 17 |
| 207 | 135.70 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 20 |
| 210 | 135.81 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 18 |
| 219 | 135.93 | humidity | 70 | 270 | > th | dose independent | rect. | 16 | 9 |
| 226 | 135.96 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 8 |
| 241 | 136.05 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 279 | 136.21 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 292 | 136.43 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 302 | 136.50 | humidity | 60 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 313 | 136.54 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 319 | 136.56 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 349 | 136.62 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 354 | 136.62 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 358 | 136.62 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 376 | 136.64 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 433 | 136.92 | radiation | 10 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 483 | 137.21 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 510 | 137.38 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 557 | 137.62 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 654 | 137.76 | radiation | 10 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 711 | 137.93 | humidity | 70 | 1440 | < th | dose dependent | no | NA | NA |
| 712 | 137.93 | humidity | 70 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 734 | 137.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 769 | 137.94 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 10 |
| 801 | 137.99 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 805 | 138.01 | humidity | 60 | 270 | > th | dose independent | rect. | 17 | 21 |
| 817 | 138.01 | temperature | 10 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 825 | 138.06 | radiation | 10 | 270 | < th | dose dependent | sin | 16 | NA |
| 826 | 138.06 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 845 | 138.17 | radiation | 40 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 886 | 138.22 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 891 | 138.29 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 896 | 138.37 | radiation | 40 | 1440 | > th | dose dependent | sin | 18 | NA |
| 898 | 138.38 | radiation | 40 | 1440 | > th | dose independent | sin | 12 | NA |
| 940 | 138.54 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |